N6-methyladenosine mRNA marking promotes selective translation of regulons required for human erythropoiesis

Nat Commun. 2019 Oct 10;10(1):4596. doi: 10.1038/s41467-019-12518-6.

Abstract

Many of the regulatory features governing erythrocyte specification, maturation, and associated disorders remain enigmatic. To identify new regulators of erythropoiesis, we utilize a functional genomic screen for genes affecting expression of the erythroid marker CD235a/GYPA. Among validating hits are genes coding for the N6-methyladenosine (m6A) mRNA methyltransferase (MTase) complex, including, METTL14, METTL3, and WTAP. We demonstrate that m6A MTase activity promotes erythroid gene expression programs through selective translation of ~300 m6A marked mRNAs, including those coding for SETD histone methyltransferases, ribosomal components, and polyA RNA binding proteins. Remarkably, loss of m6A marks results in dramatic loss of H3K4me3 marks across key erythroid-specific KLF1 transcriptional targets (e.g., Heme biosynthesis genes). Further, each m6A MTase subunit and a subset of their mRNAs targets are required for human erythroid specification in primary bone-marrow derived progenitors. Thus, m6A mRNA marks promote the translation of a network of genes required for human erythropoiesis.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine / analogs & derivatives*
  • Adenosine / genetics
  • Antigens, CD34 / genetics
  • Antigens, CD34 / metabolism
  • Bone Marrow Cells / physiology
  • CRISPR-Cas Systems
  • Cell Cycle Proteins / genetics
  • Cell Line, Tumor
  • Erythropoiesis / genetics*
  • Gene Expression Regulation
  • Histones / genetics
  • Histones / metabolism
  • Humans
  • Kruppel-Like Transcription Factors / genetics
  • Kruppel-Like Transcription Factors / metabolism
  • Leukemia, Erythroblastic, Acute / genetics
  • Methyltransferases / genetics
  • Promoter Regions, Genetic
  • Protein Biosynthesis*
  • RNA Splicing Factors / genetics
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • Regulon

Substances

  • Antigens, CD34
  • Cell Cycle Proteins
  • Histones
  • Kruppel-Like Transcription Factors
  • RNA Splicing Factors
  • RNA, Messenger
  • WTAP protein, human
  • erythroid Kruppel-like factor
  • histone H3 trimethyl Lys4
  • N-methyladenosine
  • Methyltransferases
  • METTL3 protein, human
  • Adenosine