Automated Co-in Situ Hybridization and Immunofluorescence Using Archival Tumor Tissue

Methods Mol Biol. 2020:2148:245-256. doi: 10.1007/978-1-0716-0623-0_16.

Abstract

In situ hybridization (ISH) and immunohistochemistry (IHC) are valuable tools for molecular pathology and cancer research. Recent advances in multiplex technology, assay automation, and digital image analysis have enabled the development of co-ISH IHC or immunofluorescence (IF) methods, which allow researchers to simultaneously view and quantify expression of mRNA and protein within the preserved tissue spatial context. These data are vital to the study of the control of gene expression in the complex tumor microenvironment.

Keywords: Autostainer; Digital pathology; Image analysis; Immunofluorescence; Immunohistochemistry; In situ hybridization; Multiplex; Pathology informatics; Quantitative analysis; Translational control.

MeSH terms

  • Automation
  • Biomarkers, Tumor / genetics
  • Biomarkers, Tumor / isolation & purification*
  • Fluorescent Antibody Technique / methods*
  • Humans
  • Immunohistochemistry / methods
  • In Situ Hybridization / methods*
  • Neoplasms / diagnosis*
  • Neoplasms / genetics
  • Paraffin Embedding
  • Tumor Microenvironment / genetics

Substances

  • Biomarkers, Tumor