ALKBH5 regulates anti-PD-1 therapy response by modulating lactate and suppressive immune cell accumulation in tumor microenvironment

Proc Natl Acad Sci U S A. 2020 Aug 18;117(33):20159-20170. doi: 10.1073/pnas.1918986117. Epub 2020 Aug 3.

Abstract

Although immune checkpoint blockade (ICB) therapy has revolutionized cancer treatment, many patients do not respond or develop resistance to ICB. N6 -methylation of adenosine (m6A) in RNA regulates many pathophysiological processes. Here, we show that deletion of the m6A demethylase Alkbh5 sensitized tumors to cancer immunotherapy. Alkbh5 has effects on m6A density and splicing events in tumors during ICB. Alkbh5 modulates Mct4/Slc16a3 expression and lactate content of the tumor microenvironment and the composition of tumor-infiltrating Treg and myeloid-derived suppressor cells. Importantly, a small-molecule Alkbh5 inhibitor enhanced the efficacy of cancer immunotherapy. Notably, the ALKBH5 gene mutation and expression status of melanoma patients correlate with their response to immunotherapy. Our results suggest that m6A demethylases in tumor cells contribute to the efficacy of immunotherapy and identify ALKBH5 as a potential therapeutic target to enhance immunotherapy outcome in melanoma, colorectal, and potentially other cancers.

Keywords: GVAX; PD-1 blockade; immunotherapy enhancers; m6A RNA modification; melanoma.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • AlkB Homolog 5, RNA Demethylase / genetics
  • AlkB Homolog 5, RNA Demethylase / metabolism*
  • Antibodies
  • Cancer Vaccines / immunology*
  • Cytokines / genetics
  • Cytokines / metabolism
  • Gene Deletion
  • Gene Expression Regulation, Neoplastic
  • Humans
  • Lactates / metabolism*
  • Melanoma / metabolism*
  • Melanoma / therapy
  • Methyltransferases / genetics
  • Methyltransferases / metabolism
  • Monocarboxylic Acid Transporters / genetics
  • Monocarboxylic Acid Transporters / metabolism
  • Muscle Proteins / genetics
  • Muscle Proteins / metabolism
  • Myeloid-Derived Suppressor Cells / physiology
  • Programmed Cell Death 1 Receptor / immunology*
  • RNA Splice Sites
  • RNA Splicing
  • Symporters / genetics
  • Symporters / metabolism
  • T-Lymphocytes, Regulatory / physiology*
  • Transcriptome
  • Tumor Microenvironment
  • Vascular Endothelial Growth Factor A / genetics
  • Vascular Endothelial Growth Factor A / metabolism

Substances

  • Antibodies
  • Cancer Vaccines
  • Cytokines
  • GVAX vaccine
  • Lactates
  • Monocarboxylic Acid Transporters
  • Muscle Proteins
  • PDCD1 protein, human
  • Programmed Cell Death 1 Receptor
  • RNA Splice Sites
  • SLC16A3 protein, human
  • SLC16A4 protein, human
  • Symporters
  • Vascular Endothelial Growth Factor A
  • ALKBH5 protein, human
  • AlkB Homolog 5, RNA Demethylase
  • Methyltransferases
  • METTL3 protein, human