Constructing the rodent stereotaxic brain atlas: a survey

Sci China Life Sci. 2022 Jan;65(1):93-106. doi: 10.1007/s11427-020-1911-9. Epub 2021 Apr 13.

Abstract

The stereotaxic brain atlas is a fundamental reference tool commonly used in the field of neuroscience. Here we provide a brief history of brain atlas development and clarify three key conceptual elements of stereotaxic brain atlasing: brain image, atlas, and stereotaxis. We also refine four technical indices for evaluating the construction of atlases: the quality of staining and labeling, the granularity of delineation, spatial resolution, and the precision of spatial location and orientation. Additionally, we discuss state-of-the-art technologies and their trends in the fields of image acquisition, stereotaxic coordinate construction, image processing, anatomical structure recognition, and publishing: the procedures of brain atlas illustration. We believe that the use of single-cell resolution and micron-level location precision will become a future trend in the study of the stereotaxic brain atlas, which will greatly benefit the development of neuroscience.

Keywords: brain atlas; brainsmatics; cytoarchitecture; stereotaxic.

Publication types

  • Historical Article
  • Review

MeSH terms

  • Anatomy, Artistic* / history
  • Anatomy, Artistic* / methods
  • Animals
  • Atlases as Topic* / history
  • Brain / anatomy & histology*
  • History, 20th Century
  • History, 21st Century
  • Imaging, Three-Dimensional
  • Publishing
  • Rodentia / anatomy & histology*
  • Stereotaxic Techniques