The molecular coupling between substrate recognition and ATP turnover in a AAA+ hexameric helicase loader

Elife. 2021 May 26:10:e64232. doi: 10.7554/eLife.64232.

Abstract

In many bacteria and eukaryotes, replication fork establishment requires the controlled loading of hexameric, ring-shaped helicases around DNA by AAA+(ATPases Associated with various cellular Activities) ATPases. How loading factors use ATP to control helicase deposition is poorly understood. Here, we dissect how specific ATPase elements of Escherichia coli DnaC, an archetypal loader for the bacterial DnaB helicase, play distinct roles in helicase loading and the activation of DNA unwinding. We have identified a new element, the arginine-coupler, which regulates the switch-like behavior of DnaC to prevent futile ATPase cycling and maintains loader responsiveness to replication restart systems. Our data help explain how the ATPase cycle of a AAA+-family helicase loader is channeled into productive action on its target; comparative studies indicate that elements analogous to the Arg-coupler are present in related, switch-like AAA+ proteins that control replicative helicase loading in eukaryotes, as well as in polymerase clamp loading and certain classes of DNA transposases.

Keywords: AAA+ ATPase; DNA replication; Meier-Gorlin syndrome; biochemistry; chemical biology; helicase; none.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Adenosine Triphosphate / metabolism*
  • Binding Sites
  • DNA Replication*
  • DNA, Bacterial / biosynthesis*
  • DNA, Bacterial / genetics
  • DnaB Helicases / genetics
  • DnaB Helicases / metabolism*
  • Escherichia coli / enzymology*
  • Escherichia coli / genetics
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism*
  • Gene Expression Regulation, Bacterial
  • Models, Molecular
  • Nucleic Acid Conformation
  • Protein Binding
  • Protein Conformation
  • Structure-Activity Relationship

Substances

  • DNA, Bacterial
  • DnaC protein, E coli
  • Escherichia coli Proteins
  • Adenosine Triphosphate
  • dnaB protein, E coli
  • DnaB Helicases