Declined expressions of vast mitochondria-related genes represented by CYCS and transcription factor ESRRA in skeletal muscle aging

Bioengineered. 2021 Dec;12(1):3485-3502. doi: 10.1080/21655979.2021.1948951.

Abstract

Age-related skeletal muscle deterioration (sarcopenia) has a significant effect on the elderly's health and quality of life, but the molecular and gene regulatory mechanisms remain largely unknown. It is necessary to identify the candidate genes related to skeletal muscle aging and prospective therapeutic targets for effective treatments. The age-line-related genes (ALRGs) and age-line-related transcripts (ALRTs) were investigated using the gene expression profiles of GSE47881 and GSE118825 from the Gene Expression Omnibus (GEO) database. The protein-protein interaction (PPI) networks were performed to identify the key molecules with Cytoscape, and Gene Set Enrichment Analysis (GSEA) was used to clarify the potential molecular functions. Two hub molecules were finally obtained and verified with quantitative real-time PCR (qRT-PCR). The results showed that the expression of mitochondria genes involved in mitochondrial electron transport, complex assembly of the respiratory chain, tricarboxylic acid cycle, oxidative phosphorylation, and ATP synthesis were down-regulated in skeletal muscle with aging. We further identified a primary hub gene of CYCS (Cytochrome C) and a key transcription factor of ESRRA (Estrogen-related Receptor Alpha) to be associated closely with skeletal muscle aging. PCR analysis confirmed the expressions of CYCS and ESRRA in gastrocnemius muscles of mice of different ages were significantly different, and decreased gradually with age. In conclusion, the main cause of skeletal muscle aging may be the systematically reduced expression of mitochondrial functional genes. The CYCS and ESRRA may play significant roles in the progression of skeletal muscle aging and serve as potential biomarkers for future diagnosis and treatment.

Keywords: CYCS; ESRRA; Skeletal muscle aging; gene expression; mitochondria.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adolescent
  • Adult
  • Aged
  • Aging / genetics*
  • Aging / metabolism
  • Child
  • Cytochromes c / genetics*
  • Cytochromes c / metabolism
  • ERRalpha Estrogen-Related Receptor
  • Humans
  • Middle Aged
  • Mitochondria / genetics*
  • Muscle, Skeletal / metabolism*
  • Protein Interaction Maps / genetics
  • Receptors, Estrogen / genetics*
  • Receptors, Estrogen / metabolism
  • Transcriptome / genetics
  • Young Adult

Substances

  • Receptors, Estrogen
  • Cytochromes c

Grants and funding

This work was supported by the Industry prospecting and common key technology key projects of Jiangsu Province Science and Technology Department [BE2020721]; Big data industry development pilot demonstration project of Ministry of Industry and Information Technology of China [2019-243]; Special guidance funds for service industry of Jiangsu Province Development and Reform Commission [2019-1089]; National key Research & Development plan of Ministry of Science and Technology of China [2018YFC1314900, 2018YFC1314901].