Structural basis of early translocation events on the ribosome

Nature. 2021 Jul;595(7869):741-745. doi: 10.1038/s41586-021-03713-x. Epub 2021 Jul 7.

Abstract

Peptide-chain elongation during protein synthesis entails sequential aminoacyl-tRNA selection and translocation reactions that proceed rapidly (2-20 per second) and with a low error rate (around 10-3 to 10-5 at each step) over thousands of cycles1. The cadence and fidelity of ribosome transit through mRNA templates in discrete codon increments is a paradigm for movement in biological systems that must hold for diverse mRNA and tRNA substrates across domains of life. Here we use single-molecule fluorescence methods to guide the capture of structures of early translocation events on the bacterial ribosome. Our findings reveal that the bacterial GTPase elongation factor G specifically engages spontaneously achieved ribosome conformations while in an active, GTP-bound conformation to unlock and initiate peptidyl-tRNA translocation. These findings suggest that processes intrinsic to the pre-translocation ribosome complex can regulate the rate of protein synthesis, and that energy expenditure is used later in the translocation mechanism than previously proposed.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Codon
  • Escherichia coli / genetics
  • Escherichia coli Proteins / metabolism
  • Models, Molecular
  • Peptide Elongation Factor G / metabolism*
  • Protein Biosynthesis*
  • RNA, Messenger / genetics
  • RNA, Transfer, Amino Acyl / genetics*
  • Ribosomes / metabolism*

Substances

  • Codon
  • Escherichia coli Proteins
  • Peptide Elongation Factor G
  • RNA, Messenger
  • RNA, Transfer, Amino Acyl
  • tRNA, peptidyl-