DRAMP 3.0: an enhanced comprehensive data repository of antimicrobial peptides

Nucleic Acids Res. 2022 Jan 7;50(D1):D488-D496. doi: 10.1093/nar/gkab651.

Abstract

Stapled antimicrobial peptides are an emerging class of artificial cyclic peptide molecules which have antimicrobial activity and potent structure stability. We previously published the Data Repository of Antimicrobial Peptides (DRAMP) as a manually annotated and open-access database of antimicrobial peptides (AMPs). In the update of version 3.0, special emphasis was placed on the new development of stapled AMPs, and a subclass of specific AMPs was added to store information on these special chemically modified AMPs. To help design low toxicity AMPs, we also added the cytotoxicity property of AMPs, as well as the expansion of newly discovered AMP data. At present, DRAMP has been expanded and contains 22259 entries (2360 newly added), consisting of 5891 general entries, 16110 patent entries, 77 clinical entries and 181 stapled AMPs. A total of 263 entries have predicted structures, and more than 300 general entries have links to experimentally determined structures in the Protein Data Bank. The update also covers new annotations, statistics, categories, functions and download links. DRAMP is available online at http://dramp.cpu-bioinfor.org/.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Amino Acids
  • Animals
  • Anti-Infective Agents / chemistry*
  • Anti-Infective Agents / classification
  • Anti-Infective Agents / pharmacology
  • Antimicrobial Peptides / chemistry*
  • Antimicrobial Peptides / classification
  • Antimicrobial Peptides / pharmacology
  • Bacteria / drug effects
  • Bacteria / growth & development
  • Biomimetic Materials
  • Databases, Protein
  • Erythrocytes / cytology
  • Erythrocytes / drug effects
  • Humans
  • Immunologic Factors / chemistry*
  • Immunologic Factors / classification
  • Immunologic Factors / pharmacology
  • Internet
  • Mice
  • Molecular Sequence Annotation
  • Peptides, Cyclic / chemistry*
  • Peptides, Cyclic / classification
  • Peptides, Cyclic / pharmacology
  • Protein Stability
  • RAW 264.7 Cells
  • Software*
  • Structure-Activity Relationship

Substances

  • Amino Acids
  • Anti-Infective Agents
  • Antimicrobial Peptides
  • Immunologic Factors
  • Peptides, Cyclic