Profiling CELMoD-Mediated Degradation of Cereblon Neosubstrates

Methods Mol Biol. 2021:2365:283-300. doi: 10.1007/978-1-0716-1665-9_15.

Abstract

Targeted protein degradation is garnering increased attention as a therapeutic modality due in part to its promise of modulating targets previously considered undruggable. Cereblon E3 Ligase Modulating Drugs (CELMoDs) are one of the most well-characterized therapeutics employing this modality. CELMoDs hijack Cereblon E3 ligase activity causing neosubstrates to be ubiquitinated and degraded in the proteasome. Here, we describe a suite of assays-cellular substrate degradation, confirmation of CELMoD mechanism of action, in vitro ubiquitination, and Cereblon binding-that can be used to characterize CELMoD-mediated degradation of Cereblon neosubstrates. While the assays presented herein can be run independently, when combined they provide a strong platform to support the discovery and optimization of CELMoDs and fuel validation of targets degraded by this drug modality.

Keywords: CELMoD; Cellular neosubstrate degradation; Cereblon; Cereblon binding; In vitro ubiquitination; Targeted protein degradation.

MeSH terms

  • Adaptor Proteins, Signal Transducing / metabolism
  • Nanostructures*
  • Proteasome Endopeptidase Complex / metabolism
  • Proteolysis
  • Ubiquitin-Protein Ligases / metabolism
  • Ubiquitination

Substances

  • Adaptor Proteins, Signal Transducing
  • Ubiquitin-Protein Ligases
  • Proteasome Endopeptidase Complex