Purified EDEM3 or EDEM1 alone produces determinant oligosaccharide structures from M8B in mammalian glycoprotein ERAD

Elife. 2021 Oct 26:10:e70357. doi: 10.7554/eLife.70357.

Abstract

Sequential mannose trimming of N-glycan, from M9 to M8B and then to oligosaccharides exposing the α1,6-linked mannosyl residue (M7A, M6, and M5), facilitates endoplasmic reticulum-associated degradation of misfolded glycoproteins (gpERAD). We previously showed that EDEM2 stably disulfide-bonded to the thioredoxin domain-containing protein TXNDC11 is responsible for the first step (George et al., 2020). Here, we show that EDEM3 and EDEM1 are responsible for the second step. Incubation of pyridylamine-labeled M8B with purified EDEM3 alone produced M7 (M7A and M7C), M6, and M5. EDEM1 showed a similar tendency, although much lower amounts of M6 and M5 were produced. Thus, EDEM3 is a major α1,2-mannosidase for the second step from M8B. Both EDEM3 and EDEM1 trimmed M8B from a glycoprotein efficiently. Our confirmation of the Golgi localization of MAN1B indicates that no other α1,2-mannosidase is required for gpERAD. Accordingly, we have established the entire route of oligosaccharide processing and the enzymes responsible.

Keywords: biochemistry; cell biology; chemical biology; glycoprotein; human; mannose trimming; protein degradation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Calcium-Binding Proteins / genetics*
  • Calcium-Binding Proteins / metabolism
  • Cell Line
  • Endoplasmic Reticulum-Associated Degradation / genetics*
  • Glycoproteins / metabolism*
  • Humans
  • Membrane Proteins / genetics*
  • Membrane Proteins / metabolism
  • Oligosaccharides / metabolism*
  • alpha-Mannosidase / genetics*
  • alpha-Mannosidase / metabolism

Substances

  • Calcium-Binding Proteins
  • EDEM1 protein, human
  • Glycoproteins
  • Membrane Proteins
  • Oligosaccharides
  • EDEM3 protein, human
  • alpha-Mannosidase

Grants and funding

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.