PET-BIDS, an extension to the brain imaging data structure for positron emission tomography

Martin Norgaard; Granville J Matheson; Hanne D Hansen; Adam Thomas; Graham Searle; Gaia Rizzo; Mattia Veronese; Alessio Giacomel; Maqsood Yaqub; Matteo Tonietto; Thomas Funck; Ashley Gillman; Hugo Boniface; Alexandre Routier; Jelle R Dalenberg; Tobey Betthauser; Franklin Feingold; Christopher J Markiewicz; Krzysztof J Gorgolewski; Ross W Blair; Stefan Appelhoff; Remi Gau; Taylor Salo; Guiomar Niso; Cyril Pernet; Christophe Phillips; Robert Oostenveld; Jean-Dominique Gallezot; Richard E Carson; Gitte M Knudsen; Robert B Innis; Melanie Ganz

doi:10.1038/s41597-022-01164-1

PET-BIDS, an extension to the brain imaging data structure for positron emission tomography

Sci Data. 2022 Mar 2;9(1):65. doi: 10.1038/s41597-022-01164-1.

Authors

Martin Norgaard^{1

2}, Granville J Matheson^{3

4}, Hanne D Hansen^{1

5}, Adam Thomas⁶, Graham Searle⁷, Gaia Rizzo⁷, Mattia Veronese^{8

9}, Alessio Giacomel⁸, Maqsood Yaqub¹⁰, Matteo Tonietto¹¹, Thomas Funck¹², Ashley Gillman¹³, Hugo Boniface¹⁴, Alexandre Routier¹⁵, Jelle R Dalenberg¹⁶, Tobey Betthauser¹⁷, Franklin Feingold², Christopher J Markiewicz², Krzysztof J Gorgolewski², Ross W Blair², Stefan Appelhoff¹⁸, Remi Gau¹⁹, Taylor Salo²⁰, Guiomar Niso²¹, Cyril Pernet¹, Christophe Phillips²², Robert Oostenveld^{23

24}, Jean-Dominique Gallezot²⁵, Richard E Carson²⁵, Gitte M Knudsen¹, Robert B Innis²⁶, Melanie Ganz^{27

28}

Affiliations

¹ Neurobiology Research Unit, Rigshospitalet, and Institute of Clinical Medicine, Univ. Copenhagen, København, Denmark.
² Department of Psychology, Stanford University, California, USA.
³ Department of Psychiatry, Columbia University, New York, NY, 10032, USA.
⁴ Centre for Psychiatry Research, Department of Clinical Neuroscience, Karolinska Institutet and Stockholm Health Care Services, Stockholm, Sweden.
⁵ Athinoula A. Martinos Center for Biomedical Imaging, MGH/HST, Charlestown, MA, USA.
⁶ Intramural Research Program, NIMH, Bethesda, USA.
⁷ Invicro and Division of Brain Sciences, Imperial College London, London, UK.
⁸ Centre for Neuroimaging Sciences, King's College London, London, UK.
⁹ Department of Information Engineering, University of Padua, Padua, Italy.
¹⁰ Amsterdam UMC, location VUmc, department of radiology and nuclear medicine, Amsterdam, Netherlands.
¹¹ Université Paris-Saclay, CEA, CNRS, Inserm, BioMaps, Service Hospitalier Frédéric Joliot, Orsay, France.
¹² INM-1, Jülich Forschungszentrum, Jülich, Germany.
¹³ Aust. e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation, Townsville, Australia.
¹⁴ Centre d'Acquisition et de Traitement des Images, CEA, Paris, France.
¹⁵ Inria, Aramis project-team, Sorbonne Université, Institut du Cerveau - Paris Brain Institute - ICM, Inserm, CNRS, AP-HP, Hôpital de la Pitié Salpêtriére, Paris, France.
¹⁶ Department of Neurology, University of Groningen, University Medical Center Groningen, Groningen, Netherlands.
¹⁷ Wisconsin Alzheimer's Disease Research Center, Division of Geriatrics, Department of Medicine, University of Wisconsin-Madison School of Medicine and Public Health, Madison, WI, USA.
¹⁸ Center for Adaptive Rationality, Max Planck Institute for Human Development, Berlin, Germany.
¹⁹ Institute of psychology, Université catholique de Louvain, Louvain la Neuve, Belgium.
²⁰ Department of Psychology, Florida International University, Miami, FL, USA.
²¹ Psychological Brain Sciences, Indiana University, Bloomington, IN, USA.
²² GIGA Cyclotron Research Centre in vivo imaging, University of Liege, Liege, Belgium.
²³ Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen, Netherlands.
²⁴ NatMEG, Karolinska Institutet, Stockholm, Sweden.
²⁵ Department of Radiology and Biomedical Imaging, Yale University, New Haven, USA.
²⁶ Molecular Imaging Branch, National Institute of Mental Health, National Institutes of Health, Bethesda, USA.
²⁷ Neurobiology Research Unit, Rigshospitalet, and Institute of Clinical Medicine, Univ. Copenhagen, København, Denmark. mganz@nru.dk.
²⁸ Department of Computer Science, University of Copenhagen, Copenhagen, Denmark. mganz@nru.dk.

Abstract

The Brain Imaging Data Structure (BIDS) is a standard for organizing and describing neuroimaging datasets, serving not only to facilitate the process of data sharing and aggregation, but also to simplify the application and development of new methods and software for working with neuroimaging data. Here, we present an extension of BIDS to include positron emission tomography (PET) data, also known as PET-BIDS, and share several open-access datasets curated following PET-BIDS along with tools for conversion, validation and analysis of PET-BIDS datasets.

PET-BIDS, an extension to the brain imaging data structure for positron emission tomography

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