CDK7/12/13 inhibition targets an oscillating leukemia stem cell network and synergizes with venetoclax in acute myeloid leukemia

EMBO Mol Med. 2022 Apr 7;14(4):e14990. doi: 10.15252/emmm.202114990. Epub 2022 Mar 7.

Abstract

The heterogeneous response of acute myeloid leukemia (AML) to current anti-leukemic therapies is only partially explained by mutational heterogeneity. We previously identified GPR56 as a surface marker associated with poor outcome across genetic groups, which characterizes two leukemia stem cell (LSC)-enriched compartments with different self-renewal capacities. How these compartments self-renew remained unclear. Here, we show that GPR56+ LSC compartments are promoted in a complex network involving epithelial-to-mesenchymal transition (EMT) regulators besides Rho, Wnt, and Hedgehog (Hh) signaling. Unexpectedly, Wnt pathway inhibition increased the more immature, slowly cycling GPR56+ CD34+ fraction and Hh/EMT gene expression, while Wnt activation caused opposite effects. Our data suggest that the crucial role of GPR56 lies in its ability to co-activate these opposing signals, thus ensuring the constant supply of both LSC subsets. We show that CDK7 inhibitors suppress both LSC-enriched subsets in vivo and synergize with the Bcl-2 inhibitor venetoclax. Our data establish reciprocal transition between LSC compartments as a novel concept underlying the poor outcome in GPR56high AML and propose combined CDK7 and Bcl-2 inhibition as LSC-directed therapy in this disease.

Keywords: AML; CDK7 inhibition; GPR56; leukemia stem cell; self-renewal.

MeSH terms

  • Antineoplastic Combined Chemotherapy Protocols / pharmacology
  • Bridged Bicyclo Compounds, Heterocyclic* / pharmacology
  • CDC2 Protein Kinase / antagonists & inhibitors
  • Cyclin-Dependent Kinase-Activating Kinase
  • Cyclin-Dependent Kinases* / antagonists & inhibitors
  • Drug Synergism
  • Hedgehog Proteins / metabolism
  • Hedgehog Proteins / therapeutic use
  • Humans
  • Leukemia, Myeloid, Acute* / drug therapy
  • Leukemia, Myeloid, Acute* / metabolism
  • Leukemia, Myeloid, Acute* / pathology
  • Neoplastic Stem Cells / drug effects
  • Neoplastic Stem Cells / metabolism
  • Neoplastic Stem Cells / pathology
  • Protein Kinase Inhibitors* / pharmacology
  • Proto-Oncogene Proteins c-bcl-2 / metabolism
  • Proto-Oncogene Proteins c-bcl-2 / therapeutic use
  • Sulfonamides* / pharmacology

Substances

  • Bridged Bicyclo Compounds, Heterocyclic
  • Hedgehog Proteins
  • Protein Kinase Inhibitors
  • Proto-Oncogene Proteins c-bcl-2
  • Sulfonamides
  • CDC2 Protein Kinase
  • CDK12 protein, human
  • CDK13 protein, human
  • Cyclin-Dependent Kinases
  • venetoclax
  • Cyclin-Dependent Kinase-Activating Kinase
  • CDK7 protein, human

Associated data

  • GEO/GSE150175
  • GEO/GSE150868
  • GEO/GSE147727
  • GEO/GSE38236
  • GEO/GSE70872
  • GEO/GSE48843
  • GEO/GSE111669