Siccirubricoccus soli sp. nov., a novel bacterial species isolated from Jiaozi Mountain soil

Antonie Van Leeuwenhoek. 2022 Oct;115(10):1285-1295. doi: 10.1007/s10482-022-01771-3. Epub 2022 Aug 23.

Abstract

An isolate of Gram-stain-negative and strictly aerobic bacterium, designated KC 17139T, was isolated from Jiaozi Mountain sample in Yunnan, China. Cells were non-motile cocci to oval, catalase-positive and oxidase-positive. Growth occurred at 0-7% NaCl (w/v; optimum, 0%), pH 6.0-8.0 (optimum, pH 7.0) and 15-45 °C (optimum, 28-37 °C). The polar lipids were diphosphatidylglycerol (DPG), phosphatidylethanolamine (PE), phosphatidylglycerol (PG), phosphatidylcholine (PC) and four unidentified aminolipids (UALs). Strain KC 17139T contained summed feature 8 (comprising C18:1 ω7c and/or C18:1 ω6c), C18:1 2OH and C16:0 as major cellular fatty acids (> 5%) and ubiquinone-10 as the sole isoprenoid quinone. The 16S rRNA gene sequence analysis indicated that strain KC 17139T shared highest similarities with Siccirubricoccus phaeus 1-3T (96.7%) and Siccirubricoccus deserti SYSU D8009T (95.0%). Strain KC 17139T clustered with the two Siccirubricoccus type strains, but formed a separate branch in both 16S rRNA gene and genome-scale phylogenetic dendrograms. The genomic DNA G + C content of strain KC 17139T was 71.2%. Genomic comparisons between strain KC 17139T and its close relatives showed the highest digital DNA-DNA hybridisation to S. phaeus (35.5%), highest average nucleotide identity to S. phaeus (88.2%), indicating that strain KC 17139T represents a novel species. On the basis of results of phenotypic, chemotaxonomic and molecular analysis, we report a new bacterium strain KC 17139T belonged to genus Siccirubricoccus, for which the name Siccirubricoccus soli sp. nov. is proposed. The type strain is KC 17139T (= CGMCC 1.18756T = JCM 35132T).

Keywords: New species; Polyphasic taxonomy; Siccirubricoccus soli sp. nov..

MeSH terms

  • Bacterial Typing Techniques
  • Cardiolipins
  • Catalase
  • China
  • DNA, Bacterial / genetics
  • Fatty Acids / chemistry
  • Nucleotides
  • Phosphatidylcholines
  • Phosphatidylethanolamines*
  • Phospholipids / chemistry
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sodium Chloride
  • Soil
  • Terpenes
  • Ubiquinone* / chemistry

Substances

  • Cardiolipins
  • DNA, Bacterial
  • Fatty Acids
  • Nucleotides
  • Phosphatidylcholines
  • Phosphatidylethanolamines
  • Phospholipids
  • RNA, Ribosomal, 16S
  • Soil
  • Terpenes
  • Ubiquinone
  • Sodium Chloride
  • Catalase