Understanding a high-risk acute myeloid leukemia by analyzing the interactome of its major driver mutation

PLoS Genet. 2022 Oct 26;18(10):e1010463. doi: 10.1371/journal.pgen.1010463. eCollection 2022 Oct.

Abstract

The WHO classifies t(6;9)-positive acute myeloid leukemia (AML) as a subgroup of high-risk AML because of its clinical and biological peculiarities, such as young age and therapy resistance. t(6;9) encodes the DEK/NUP214 fusion oncoprotein that targets only a small subpopulation of bone marrow progenitors for leukemic transformation. This distinguishes DEK/NUP214 from other fusion oncoproteins, such as PML/RARα, RUNX1/ETO, or MLL/AF9, which have a broad target population they block differentiation and increase stem cell capacity. A common theme among most leukemogenic fusion proteins is their aberrant localization compared to their wild-type counterparts. Although the actual consequences are widely unknown, it seems to contribute to leukemogenesis most likely by a sequester of interaction partners. Thus, we applied a global approach to studying the consequences of the aberrant localization of t(6;9)-DEK/NUP214 for its interactome. This study aimed to disclose the role of localization of DEK/NUP214 and the related sequester of proteins interacting with DEK/NUP214 for the determination of the biology of t(6;9)-AML. Here we show the complexity of the biological consequences of the expression of DEK/NUP214 by an in-depth bioinformatic analysis of the interactome of DEK/NUP214 and its biologically dead mutants. DEK/NUP214's interactome points to an essential role for aberrant RNA-regulation and aberrant regulation of apoptosis and leukocyte activation as a significant determinant of the phenotype of t(6;9)-AML. Taken together, we provide evidence that the interactome contributes to the aberrant biology of an oncoprotein, providing opportunities for developing novel targeted therapy approaches.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bone Marrow / metabolism
  • Chromosomal Proteins, Non-Histone / genetics
  • Chromosomal Proteins, Non-Histone / metabolism
  • Humans
  • Leukemia, Myeloid, Acute* / genetics
  • Mutation
  • Oncogene Proteins / genetics
  • Oncogene Proteins / metabolism
  • Oncogene Proteins, Fusion* / genetics
  • Oncogene Proteins, Fusion* / metabolism
  • Poly-ADP-Ribose Binding Proteins / genetics

Substances

  • Oncogene Proteins, Fusion
  • Oncogene Proteins
  • DEK protein, human
  • Poly-ADP-Ribose Binding Proteins
  • Chromosomal Proteins, Non-Histone

Grants and funding

MR was funded by Deutsche Krebshilfe e.V. (109787)(https://www.krebshilfe.de/) and Alfred and Angelika Gutermuth Foundation (https://www.gutermuth-stiftung.de/); N.G. was supported by FAZIT-Foundation GVGmbH, Frankfurt, Germany. (https://www.fazit-stiftung.de/); HE was supported by the Newton-Mosharafa Fund (https://www.gov.uk/government/news/newton-mosharafa-fund-knocks-on-scientists-doors); EM was supported by the Scientific and Technological Research Council of Turkey (https://www.tubitak.gov.tr/en); PH was supported by a grant from Leukaemia and Myeloma Research UK (https://lmruk.org/). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.