MORC proteins regulate transcription factor binding by mediating chromatin compaction in active chromatin regions

Genome Biol. 2023 Apr 26;24(1):96. doi: 10.1186/s13059-023-02939-4.

Abstract

Background: The microrchidia (MORC) proteins are a family of evolutionarily conserved GHKL-type ATPases involved in chromatin compaction and gene silencing. Arabidopsis MORC proteins act in the RNA-directed DNA methylation (RdDM) pathway, where they act as molecular tethers to ensure the efficient establishment of RdDM and de novo gene silencing. However, MORC proteins also have RdDM-independent functions although their underlying mechanisms are unknown.

Results: In this study, we examine MORC binding regions where RdDM does not occur in order to shed light on the RdDM-independent functions of MORC proteins. We find that MORC proteins compact chromatin and reduce DNA accessibility to transcription factors, thereby repressing gene expression. We also find that MORC-mediated repression of gene expression is particularly important under conditions of stress. MORC-regulated transcription factors can in some cases regulate their own transcription, resulting in feedback loops.

Conclusions: Our findings provide insights into the molecular mechanisms of MORC-mediated chromatin compaction and transcription regulation.

Keywords: Chromatin compaction; MORC; Microrchidia; TF binding; Transcription regulation.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Arabidopsis Proteins* / genetics
  • Arabidopsis Proteins* / metabolism
  • Arabidopsis* / genetics
  • Arabidopsis* / metabolism
  • Chromatin / metabolism
  • DNA Methylation
  • Gene Expression Regulation, Plant
  • Gene Silencing
  • Transcription Factors / metabolism

Substances

  • Chromatin
  • Arabidopsis Proteins
  • Transcription Factors