Transcriptional and Histone Acetylation Changes Associated with CRE Elements Expose Key Factors Governing the Regulatory Circuit in the Early Stage of Huntington's Disease Models

Int J Mol Sci. 2023 Jun 29;24(13):10848. doi: 10.3390/ijms241310848.

Abstract

Huntington's disease (HD) is a disorder caused by an abnormal expansion of trinucleotide CAG repeats within the huntingtin (Htt) gene. Under normal conditions, the CREB Binding Protein interacts with CREB elements and acetylates Lysine 27 of Histone 3 to direct the expression of several genes. However, mutant Htt causes depletion of CBP, which in turn induces altered histone acetylation patterns and transcriptional deregulation. Here, we have studied a differential expression analysis and H3K27ac variation in 4- and 6-week-old R6/2 mice as a model of juvenile HD. The analysis of differential gene expression and acetylation levels were integrated into Gene Regulatory Networks revealing key regulators involved in the altered transcription cascade. Our results show changes in acetylation and gene expression levels that are related to impaired neuronal development, and key regulators clearly defined in 6-week-old mice are proposed to drive the downstream regulatory cascade in HD. Here, we describe the first approach to determine the relationship among epigenetic changes in the early stages of HD. We determined the existence of changes in pre-symptomatic stages of HD as a starting point for early onset indicators of the progression of this disease.

Keywords: Huntington’s disease; cAMP response element-binding protein; gene regulatory networks; histone acetylation; polyQ diseases.

MeSH terms

  • Acetylation
  • Animals
  • Disease Models, Animal
  • Epigenesis, Genetic
  • Histones / genetics
  • Histones / metabolism
  • Huntingtin Protein / genetics
  • Huntingtin Protein / metabolism
  • Huntington Disease* / genetics
  • Huntington Disease* / metabolism
  • Mice

Substances

  • Histones
  • Huntingtin Protein

Grants and funding

This research was funded by Beca de Doctorado Nacional ANID 21181038 and Beca Universidad Mayor (to S.A). ANID/CONICY-FONDECYT Postdoctorado 3160622 (to M.S.) and 3220673 (to J.S.C.R). Proyecto Fondecyt regular 1181089 (to A.J.M.M.) and Fondecyt regular 1230980 (R.L.V.). Proyecto Fondecyt Inicio 11171015 (to M.A.S). Centro Ciencia & Vida, FB210008, Financiamiento Basal para Centros Científicos y Tecnológicos de Excelencia de ANID (to A.J.M.M.) and Fondap 15150012 (R.L.V.). Powered@NLHPC: this research was partially supported by the supercomputing infrastructure of the NLHPC (ECM-02) and the computing infrastructure of the Centro de Genómica y Bioinformática, Universidad Mayor.