Cryptic exon inclusion is a molecular signature of LATE-NC in aging brains

Acta Neuropathol. 2024 Feb 3;147(1):29. doi: 10.1007/s00401-023-02671-0.

Abstract

The aggregation, mislocalization, and phosphorylation of TDP-43 are pathologic hallmarks of several neurodegenerative diseases and provide a defining criterion for the neuropathologic diagnosis of Limbic-predominant Age-related TDP-43 Encephalopathy (LATE). LATE neuropathologic changes (LATE-NC) are often comorbid with other neurodegenerative pathologies including Alzheimer's disease neuropathologic changes (ADNC). We examined whether TDP-43 regulated cryptic exons accumulate in the hippocampus of neuropathologically confirmed LATE-NC cases. We found that several cryptic RNAs are robustly expressed in LATE-NC cases with or without comorbid ADNC and correlate with pTDP-43 abundance; however, the accumulation of cryptic RNAs is more robust in LATE-NC with comorbid ADNC. Additionally, cryptic RNAs can robustly distinguish LATE-NC from healthy controls and AD cases. These findings expand our current understanding and provide novel potential biomarkers for LATE pathogenesis.

Keywords: Alzheimer’s disease; Cryptic exons; LATE-NC; TDP-43.

MeSH terms

  • Aging / genetics
  • Aging / pathology
  • Alzheimer Disease* / genetics
  • Alzheimer Disease* / pathology
  • Brain / pathology
  • DNA-Binding Proteins / metabolism
  • Dementia*
  • Exons
  • Humans
  • TDP-43 Proteinopathies* / pathology

Substances

  • DNA-Binding Proteins

Supplementary concepts

  • limbic-predominant age-related TDP-43 encephalopathy