Influenza D virus infection in China, 2022-2023

Emerg Microbes Infect. 2024 Dec;13(1):2343907. doi: 10.1080/22221751.2024.2343907. Epub 2024 May 15.

Abstract

Influenza D virus (IDV) plays an important role in the bovine respiratory disease (BRD) complex. Its potential for the zoonotic transmission is of particular concern. In China, IDV has previously been identified in agricultural animals by molecular surveys with no live virus isolates reported. In this study, live IDVs were successfully isolated from cattle in China, which prompted us to further investigate the national prevalence, antigenic property, and infection biology of the virus. IDV RNA was detected in 11.1% (51/460) of cattle throughout the country in 2022-2023. Moreover, we conducted the first IDV serosurveillance in China, revealing a high seroprevalence (91.4%, 393/430) of IDV in cattle during the 2022-2023 winter season. Notably, all the 16 provinces from which cattle originated possessed seropositive animals, and 3 of them displayed the 100% IDV-seropositivity rate. In contrast, a very low seroprevalence of IDV was observed in pigs (3%, 3/100) and goats (1%, 1/100) during the same period of investigation. Furthermore, besides D/Yama2019 lineage-like IDVs, we discovered the D/660 lineage-like IDV in Chinese cattle, which has not been detected to date in Asia. Finally, the Chinese IDVs replicated robustly in diverse cell lines but less efficiently in the swine cell line. Considering the nationwide distribution, high seroprevalence, and appreciably genetic diversity, further studies are required to fully evaluate the risk of Chinese IDVs for both animal and human health in China, which can be evidently facilitated by IDV isolates reported in this study.

Keywords: Influenza D virus; antigenic characterization; phylogenetic lineage; seroprevalence.

MeSH terms

  • Animals
  • Antibodies, Viral / blood
  • Cattle
  • Cattle Diseases* / epidemiology
  • Cattle Diseases* / transmission
  • Cattle Diseases* / virology
  • China / epidemiology
  • Deltainfluenzavirus
  • Goats
  • Humans
  • Orthomyxoviridae Infections* / epidemiology
  • Orthomyxoviridae Infections* / transmission
  • Orthomyxoviridae Infections* / veterinary
  • Orthomyxoviridae Infections* / virology
  • Phylogeny*
  • Seroepidemiologic Studies
  • Swine
  • Swine Diseases / epidemiology
  • Swine Diseases / virology
  • Thogotovirus* / classification
  • Thogotovirus* / genetics
  • Thogotovirus* / immunology
  • Thogotovirus* / isolation & purification

Grants and funding

This study was supported by the following grants: the NSFC grant (Nos. 32202795 and 32102750), the special funds (Nos. R2021YJ-QG008 and R2021QD-034) for Talent Introduction Program and the Project of Collaborative Innovation Center Fund (Nos. XTXM202202 and XT202207) from Guangdong Academy of Agricultural Sciences, the Project of Innovation Fund (No. 202201) from Agro-biological Gene Research Center, Guangdong Academy of Agricultural Sciences, and the grants from the open competition program of top 10 critical priorities of Agricultural Science and Technology Innovation for the 14th Five-Year Plan of Guangdong Province (2022SDZG02).