UGA read-through artifacts--when popular gene expression systems need a pATCH

Biotechniques. 1998 May;24(5):789-94. doi: 10.2144/98245st02.

Abstract

pET and similar vectors are widely used for efficient gene expression in Escherichia coli and subsequent protein purification, often by means of a C-terminal histidine (His) tag. We found that the TGA translation termination signal following the His-tag sequence in pET constructs gives rise to a significant fraction of read-through protein extended by 21 amino acids. Mass spectrometry indicated that tryptophan is inserted at the UGA (opal) stop codon in the examined non-opal suppressor strains; no evidence for translational frameshifting was detected. We have shown that the problem of obtaining heterogeneous protein preparations can easily be corrected. Plasmid pATCH1 provides a replacement sequence for the inefficient stop signal and can be used to repair both pET vectors and existing pET-based expression constructs. Our observation illustrates the largely ignored fact that a UGA codon is the worst choice for proper translation termination in efficient overexpression vectors.

Publication types

  • Research Support, Non-U.S. Gov't
  • Technical Report

MeSH terms

  • Amino Acid Sequence
  • Amino Acid Substitution / genetics
  • Artifacts
  • Base Sequence
  • Codon, Terminator*
  • Gene Expression*
  • Molecular Sequence Data
  • Plasmids / genetics*
  • Protein Biosynthesis
  • Reading Frames*
  • Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
  • Tryptophan / genetics

Substances

  • Codon, Terminator
  • Tryptophan