Population diversity in grapevine yellow speckle viroid-1 and the relationship to disease expression

Virology. 1998 Sep 1;248(2):432-44. doi: 10.1006/viro.1998.9292.

Abstract

Vitis vinifera cultivars Zinfandel-1A and Mission were found to harbor different grapevine yellow speckle viroid-1 (GYSVd-1) variants and characterized to define the relationship to yellow speckle (YS) and vein-banding (VB) diseases. Products from the left terminal (T1), pathogenic (P), and a portion of the central (C) domains of Zinfandel-1A and Mission displayed distinct single-stranded conformation polymorphism (SSCP) patterns, presumably reflecting nucleotide changes in the P domain. The two selections were shown to contain homogeneous populations of type 1 and type 2 GYSVd-1 variants described in Australia. Symptoms of YS were induced only in vines containing the type 2 variant by treatment at a constant temperature of 32 degreesC in continuous light. SSCP of Pagadebit selections from Italy revealed the nonsymptomatic variant was essentially identical to Zinfandel-1A, whereas symptomatic selections were unlike any other previously described. Nucleotide sequence confirmed that nonsymptomatic selections from Italy contained the GYSVd-1 type 1 variant. A total of 43 changes were spread throughout the T1, C, V, and T2 domains from symptomatic selections. This study establishes the Australian type 1 variant as the non-symptom-inducing form of GYSVd-1 and type 2 as the symptom-inducing variant. The distinct symptom-inducing variant from Italy is proposed as a new type 3 variant of GYSVd-1.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • DNA, Complementary / analysis
  • DNA, Viral
  • Genetic Variation
  • Italy
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Plant Viruses / classification
  • Plant Viruses / genetics*
  • Point Mutation
  • Rosales / virology*
  • Sequence Analysis, DNA
  • Viroids / classification
  • Viroids / genetics*

Substances

  • DNA, Complementary
  • DNA, Viral