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Harmonizing the Generation and Pre-publication Stewardship of FAIR Image data.
Bialy N, Alber F, Andrews B, Angelo M, Beliveau B, Bintu L, Boettiger A, Boehm U, Brown CM, Maina MB, Chambers JJ, Cimini BA, Eliceiri K, Errington R, Faklaris O, Gaudreault N, Germain RN, Goscinski W, Grunwald D, Halter M, Hanein D, Hickey JW, Lacoste J, Laude A, Lundberg E, Ma J, Malacrida L, Moore J, Nelson G, Neumann EK, Nitschke R, Onami S, Pimentel JA, Plant AL, Radtke AJ, Sabata B, Schapiro D, Schöneberg J, Spraggins JM, Sudar D, Adrien Maria Vierdag WM, Volkmann N, Wählby C, Wang SS, Yaniv Z, Strambio-De-Castillia C. Bialy N, et al. Among authors: gaudreault n. ArXiv [Preprint]. 2024 Feb 8:arXiv:2401.13022v4. ArXiv. 2024. PMID: 38351940 Free PMC article. Preprint.
Community-developed checklists for publishing images and image analyses.
Schmied C, Nelson MS, Avilov S, Bakker GJ, Bertocchi C, Bischof J, Boehm U, Brocher J, Carvalho M, Chiritescu C, Christopher J, Cimini BA, Conde-Sousa E, Ebner M, Ecker R, Eliceiri K, Fernandez-Rodriguez J, Gaudreault N, Gelman L, Grunwald D, Gu T, Halidi N, Hammer M, Hartley M, Held M, Jug F, Kapoor V, Koksoy AA, Lacoste J, Dévédec SL, Guyader SL, Liu P, Martins GG, Mathur A, Miura K, Montero Llopis P, Nitschke R, North A, Parslow AC, Payne-Dwyer A, Plantard L, Ali R, Schroth-Diez B, Schütz L, Scott RT, Seitz A, Selchow O, Sharma VP, Spitaler M, Srinivasan S, Strambio-De-Castillia C, Taatjes D, Tischer C, Jambor HK. Schmied C, et al. Among authors: gaudreault n. ArXiv [Preprint]. 2023 Sep 14:arXiv:2302.07005v2. ArXiv. 2023. Update in: Nat Methods. 2024 Feb;21(2):170-181. doi: 10.1038/s41592-023-01987-9. PMID: 36824427 Free PMC article. Updated. Preprint.
Single-cell and single-nucleus RNA-sequencing from paired normal-adenocarcinoma lung samples provide both common and discordant biological insights.
Renaut S, Saavedra Armero V, Boudreau DK, Gaudreault N, Desmeules P, Thériault S, Mathieu P, Joubert P, Bossé Y. Renaut S, et al. Among authors: gaudreault n. PLoS Genet. 2024 May 30;20(5):e1011301. doi: 10.1371/journal.pgen.1011301. eCollection 2024 May. PLoS Genet. 2024. PMID: 38814983 Free PMC article.
Prognostic implication of methylation-based circulating tumor DNA detection prior to surgery in stage I non-small cell lung cancer.
Bossé Y, Dasgupta A, Abadier M, Guthrie V, Song F, Saavedra Armero V, Gaudreault N, Orain M, Lamaze FC, Melton C, Nance T, Hung T, Hodgson D, Abbosh C, Joubert P. Bossé Y, et al. Among authors: gaudreault n. Cancer Lett. 2024 May 24;594:216984. doi: 10.1016/j.canlet.2024.216984. Online ahead of print. Cancer Lett. 2024. PMID: 38797230 Free article.
Experimental inoculation of pigs with monkeypox virus results in productive infection and transmission to sentinels.
Mantlo E, Trujillo JD, Gaudreault NN, Morozov I, Lewis CE, Matias-Ferreyra F, McDowell C, Bold D, Kwon T, Cool K, Balaraman V, Madden D, Artiaga B, Souza-Neto J, Doty JB, Carossino M, Balasuriya U, Wilson WC, Osterrieder N, Hensley L, Richt JA. Mantlo E, et al. Among authors: gaudreault nn. Emerg Microbes Infect. 2024 Dec;13(1):2352434. doi: 10.1080/22221751.2024.2352434. Epub 2024 Jun 11. Emerg Microbes Infect. 2024. PMID: 38712637 Free PMC article.
Pigs are highly susceptible to but do not transmit mink-derived highly pathogenic avian influenza virus H5N1 clade 2.3.4.4b.
Kwon T, Trujillo JD, Carossino M, Lyoo EL, McDowell CD, Cool K, Matias-Ferreyra FS, Jeevan T, Morozov I, Gaudreault NN, Balasuriya UBR, Webby RJ, Osterrieder N, Richt JA. Kwon T, et al. Among authors: gaudreault nn. Emerg Microbes Infect. 2024 Dec;13(1):2353292. doi: 10.1080/22221751.2024.2353292. Epub 2024 May 26. Emerg Microbes Infect. 2024. PMID: 38712345 Free PMC article.
Integrative genomic analyses identify candidate causal genes for calcific aortic valve stenosis involving tissue-specific regulation.
Thériault S, Li Z, Abner E, Luan J, Manikpurage HD, Houessou U, Zamani P, Briend M; Estonian Biobank Research Team; Boudreau DK, Gaudreault N, Frenette L, Argaud D, Dahmene M, Dagenais F, Clavel MA, Pibarot P, Arsenault BJ, Boekholdt SM, Wareham NJ, Esko T, Mathieu P, Bossé Y. Thériault S, et al. Among authors: gaudreault n. Nat Commun. 2024 Mar 18;15(1):2407. doi: 10.1038/s41467-024-46639-4. Nat Commun. 2024. PMID: 38494474 Free PMC article.
Gene editing of pigs to control influenza A virus infections.
Kwon T, Artiaga BL, McDowell CD, Whitworth KM, Wells KD, Prather RS, Delhon G, Cigan M, White SN, Retallick J, Gaudreault NN, Morozov I, Richt JA. Kwon T, et al. Among authors: gaudreault nn. bioRxiv [Preprint]. 2024 Jan 16:2024.01.15.575771. doi: 10.1101/2024.01.15.575771. bioRxiv. 2024. PMID: 38293027 Free PMC article. Preprint.
196 results