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An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies.
Blanc-Mathieu R, Verhelst B, Derelle E, Rombauts S, Bouget FY, Carré I, Château A, Eyre-Walker A, Grimsley N, Moreau H, Piégu B, Rivals E, Schackwitz W, Van de Peer Y, Piganeau G. Blanc-Mathieu R, et al. Among authors: chateau a. BMC Genomics. 2014 Dec 13;15(1):1103. doi: 10.1186/1471-2164-15-1103. BMC Genomics. 2014. PMID: 25494611 Free PMC article.
Aligning the unalignable: bacteriophage whole genome alignments.
Bérard S, Chateau A, Pompidor N, Guertin P, Bergeron A, Swenson KM. Bérard S, et al. Among authors: chateau a. BMC Bioinformatics. 2016 Jan 13;17:30. doi: 10.1186/s12859-015-0869-5. BMC Bioinformatics. 2016. PMID: 26757899 Free PMC article.
Ancestral gene synteny reconstruction improves extant species scaffolding.
Anselmetti Y, Berry V, Chauve C, Chateau A, Tannier E, Bérard S. Anselmetti Y, et al. Among authors: chateau a. BMC Genomics. 2015;16 Suppl 10(Suppl 10):S11. doi: 10.1186/1471-2164-16-S10-S11. Epub 2015 Oct 2. BMC Genomics. 2015. PMID: 26450761 Free PMC article.
Machine learning meets genome assembly.
Padovani de Souza K, Setubal JC, Ponce de Leon F de Carvalho AC, Oliveira G, Chateau A, Alves R. Padovani de Souza K, et al. Among authors: chateau a. Brief Bioinform. 2019 Nov 27;20(6):2116-2129. doi: 10.1093/bib/bby072. Brief Bioinform. 2019. PMID: 30137230 Review.
Involving repetitive regions in scaffolding improvement.
Delorme Q, Costa R, Mansour Y, Fiston-Lavier AS, Chateau A. Delorme Q, et al. Among authors: chateau a. J Bioinform Comput Biol. 2021 Dec;19(6):2140016. doi: 10.1142/S0219720021400163. Epub 2021 Dec 17. J Bioinform Comput Biol. 2021. PMID: 34923926
Exact approaches for scaffolding.
Weller M, Chateau A, Giroudeau R. Weller M, et al. Among authors: chateau a. BMC Bioinformatics. 2015;16 Suppl 14(Suppl 14):S2. doi: 10.1186/1471-2105-16-S14-S2. Epub 2015 Oct 2. BMC Bioinformatics. 2015. PMID: 26451725 Free PMC article.
73 results