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PET-BIDS, an extension to the brain imaging data structure for positron emission tomography.
Norgaard M, Matheson GJ, Hansen HD, Thomas A, Searle G, Rizzo G, Veronese M, Giacomel A, Yaqub M, Tonietto M, Funck T, Gillman A, Boniface H, Routier A, Dalenberg JR, Betthauser T, Feingold F, Markiewicz CJ, Gorgolewski KJ, Blair RW, Appelhoff S, Gau R, Salo T, Niso G, Pernet C, Phillips C, Oostenveld R, Gallezot JD, Carson RE, Knudsen GM, Innis RB, Ganz M. Norgaard M, et al. Among authors: markiewicz cj. Sci Data. 2022 Mar 2;9(1):65. doi: 10.1038/s41597-022-01164-1. Sci Data. 2022. PMID: 35236846 Free PMC article.
fMRIPrep: a robust preprocessing pipeline for functional MRI.
Esteban O, Markiewicz CJ, Blair RW, Moodie CA, Isik AI, Erramuzpe A, Kent JD, Goncalves M, DuPre E, Snyder M, Oya H, Ghosh SS, Wright J, Durnez J, Poldrack RA, Gorgolewski KJ. Esteban O, et al. Among authors: markiewicz cj. Nat Methods. 2019 Jan;16(1):111-116. doi: 10.1038/s41592-018-0235-4. Epub 2018 Dec 10. Nat Methods. 2019. PMID: 30532080 Free PMC article.
Analysis of task-based functional MRI data preprocessed with fMRIPrep.
Esteban O, Ciric R, Finc K, Blair RW, Markiewicz CJ, Moodie CA, Kent JD, Goncalves M, DuPre E, Gomez DEP, Ye Z, Salo T, Valabregue R, Amlien IK, Liem F, Jacoby N, Stojić H, Cieslak M, Urchs S, Halchenko YO, Ghosh SS, De La Vega A, Yarkoni T, Wright J, Thompson WH, Poldrack RA, Gorgolewski KJ. Esteban O, et al. Among authors: markiewicz cj. Nat Protoc. 2020 Jul;15(7):2186-2202. doi: 10.1038/s41596-020-0327-3. Epub 2020 Jun 8. Nat Protoc. 2020. PMID: 32514178 Free PMC article.
PyBIDS: Python tools for BIDS datasets.
Yarkoni T, Markiewicz CJ, de la Vega A, Gorgolewski KJ, Salo T, Halchenko YO, McNamara Q, DeStasio K, Poline JB, Petrov D, Hayot-Sasson V, Nielson DM, Carlin J, Kiar G, Whitaker K, DuPre E, Wagner A, Tirrell LS, Jas M, Hanke M, Poldrack RA, Esteban O, Appelhoff S, Holdgraf C, Staden I, Thirion B, Kleinschmidt DF, Lee JA, Visconti di Oleggio Castello M, Notter MP, Blair R. Yarkoni T, et al. Among authors: markiewicz cj. J Open Source Softw. 2019;4(40):1294. doi: 10.21105/joss.01294. Epub 2019 Aug 12. J Open Source Softw. 2019. PMID: 32775955 Free PMC article. No abstract available.
The OpenNeuro resource for sharing of neuroscience data.
Markiewicz CJ, Gorgolewski KJ, Feingold F, Blair R, Halchenko YO, Miller E, Hardcastle N, Wexler J, Esteban O, Goncavles M, Jwa A, Poldrack R. Markiewicz CJ, et al. Elife. 2021 Oct 18;10:e71774. doi: 10.7554/eLife.71774. Elife. 2021. PMID: 34658334 Free PMC article.
Microscopy-BIDS: An Extension to the Brain Imaging Data Structure for Microscopy Data.
Bourget MH, Kamentsky L, Ghosh SS, Mazzamuto G, Lazari A, Markiewicz CJ, Oostenveld R, Niso G, Halchenko YO, Lipp I, Takerkart S, Toussaint PJ, Khan AR, Nilsonne G, Castelli FM; BIDS Maintainers; Cohen-Adad J. Bourget MH, et al. Among authors: markiewicz cj. Front Neurosci. 2022 Apr 19;16:871228. doi: 10.3389/fnins.2022.871228. eCollection 2022. Front Neurosci. 2022. PMID: 35516811 Free PMC article.
ASL-BIDS, the brain imaging data structure extension for arterial spin labeling.
Clement P, Castellaro M, Okell TW, Thomas DL, Vandemaele P, Elgayar S, Oliver-Taylor A, Kirk T, Woods JG, Vos SB, Kuijer JPA, Achten E, van Osch MJP; BIDS maintainers; Detre JA, Lu H, Alsop DC, Chappell MA, Hernandez-Garcia L, Petr J, Mutsaerts HJMM. Clement P, et al. Sci Data. 2022 Sep 6;9(1):543. doi: 10.1038/s41597-022-01615-9. Sci Data. 2022. PMID: 36068231 Free PMC article.
21 results