Pirovano W - Search Results

1

SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information.

Boetzer M, Pirovano W. Boetzer M, et al. Among authors: pirovano w. BMC Bioinformatics. 2014 Jun 20;15:211. doi: 10.1186/1471-2105-15-211. BMC Bioinformatics. 2014. PMID: 24950923 Free PMC article.

2

Scaffolding pre-assembled contigs using SSPACE.

Boetzer M, Henkel CV, Jansen HJ, Butler D, Pirovano W. Boetzer M, et al. Among authors: pirovano w. Bioinformatics. 2011 Feb 15;27(4):578-9. doi: 10.1093/bioinformatics/btq683. Epub 2010 Dec 12. Bioinformatics. 2011. PMID: 21149342

3

Toward almost closed genomes with GapFiller.

Boetzer M, Pirovano W. Boetzer M, et al. Among authors: pirovano w. Genome Biol. 2012 Jun 25;13(6):R56. doi: 10.1186/gb-2012-13-6-r56. Genome Biol. 2012. PMID: 22731987 Free PMC article.

4

First draft genome sequence of the Japanese eel, Anguilla japonica.

Henkel CV, Dirks RP, de Wijze DL, Minegishi Y, Aoyama J, Jansen HJ, Turner B, Knudsen B, Bundgaard M, Hvam KL, Boetzer M, Pirovano W, Weltzien FA, Dufour S, Tsukamoto K, Spaink HP, van den Thillart GE. Henkel CV, et al. Among authors: pirovano w. Gene. 2012 Dec 15;511(2):195-201. doi: 10.1016/j.gene.2012.09.064. Epub 2012 Sep 29. Gene. 2012. PMID: 23026207 Free article.

5

The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system.

Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wüster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pla D, Sanz L, Hyder AS, Ribeiro JM, Arntzen JW, van den Thillart GE, Boetzer M, Pirovano W, Dirks RP, Spaink HP, Duboule D, McGlinn E, Kini RM, Richardson MK. Vonk FJ, et al. Among authors: pirovano w. Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20651-6. doi: 10.1073/pnas.1314702110. Epub 2013 Dec 2. Proc Natl Acad Sci U S A. 2013. PMID: 24297900 Free PMC article.

6

Bioinformatics approaches for viral metagenomics in plants using short RNAs: model case of study and application to a Cicer arietinum population.

Pirovano W, Miozzi L, Boetzer M, Pantaleo V. Pirovano W, et al. Front Microbiol. 2015 Jan 27;5:790. doi: 10.3389/fmicb.2014.00790. eCollection 2014. Front Microbiol. 2015. PMID: 25674078 Free PMC article.

7

NCBI-compliant genome submissions: tips and tricks to save time and money.

Pirovano W, Boetzer M, Derks MF, Smit S. Pirovano W, et al. Brief Bioinform. 2017 Mar 1;18(2):179-182. doi: 10.1093/bib/bbv104. Brief Bioinform. 2017. PMID: 26655251

8

Multiple Sequence Alignment.

Bawono P, Dijkstra M, Pirovano W, Feenstra A, Abeln S, Heringa J. Bawono P, et al. Among authors: pirovano w. Methods Mol Biol. 2017;1525:167-189. doi: 10.1007/978-1-4939-6622-6_8. Methods Mol Biol. 2017. PMID: 27896722

9

Complete Genome Sequence of Escherichia coli AS19, an Antibiotic-Sensitive Variant of E. coli Strain B REL606.

Avalos M, Boetzer M, Pirovano W, Arenas NE, Douthwaite S, van Wezel GP. Avalos M, et al. Among authors: pirovano w. Genome Announc. 2018 May 3;6(18):e00385-18. doi: 10.1128/genomeA.00385-18. Genome Announc. 2018. PMID: 29724850 Free PMC article.

10

The meaning of alignment: lessons from structural diversity.

Pirovano W, Feenstra KA, Heringa J. Pirovano W, et al. BMC Bioinformatics. 2008 Dec 23;9:556. doi: 10.1186/1471-2105-9-556. BMC Bioinformatics. 2008. PMID: 19105835 Free PMC article.

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