Yamada T - Search Results

1

dsCheck: highly sensitive off-target search software for double-stranded RNA-mediated RNA interference.

Naito Y, Yamada T, Matsumiya T, Ui-Tei K, Saigo K, Morishita S. Naito Y, et al. Among authors: yamada t. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W589-91. doi: 10.1093/nar/gki419. Nucleic Acids Res. 2005. PMID: 15980542 Free PMC article.

2

siDirect: highly effective, target-specific siRNA design software for mammalian RNA interference.

Naito Y, Yamada T, Ui-Tei K, Morishita S, Saigo K. Naito Y, et al. Among authors: yamada t. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W124-9. doi: 10.1093/nar/gkh442. Nucleic Acids Res. 2004. PMID: 15215364 Free PMC article.

3

Accelerated off-target search algorithm for siRNA.

Yamada T, Morishita S. Yamada T, et al. Bioinformatics. 2005 Apr 15;21(8):1316-24. doi: 10.1093/bioinformatics/bti155. Epub 2004 Nov 25. Bioinformatics. 2005. PMID: 15564304

4

PrimerStation: a highly specific multiplex genomic PCR primer design server for the human genome.

Yamada T, Soma H, Morishita S. Yamada T, et al. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W665-9. doi: 10.1093/nar/gkl297. Nucleic Acids Res. 2006. PMID: 16845094 Free PMC article.

5

The Gene Resource Locator: gene locus maps for transcriptome analysis.

Honkura T, Ogasawara J, Yamada T, Morishita S. Honkura T, et al. Among authors: yamada t. Nucleic Acids Res. 2002 Jan 1;30(1):221-5. doi: 10.1093/nar/30.1.221. Nucleic Acids Res. 2002. PMID: 11752299 Free PMC article.

6

[Designing functional siRNA sequences].

Yamada T, Naito Y, Ui-Tei K, Morishita S, Saigo K. Yamada T, et al. Seikagaku. 2005 Dec;77(12):1519-25. Seikagaku. 2005. PMID: 16440758 Review. Japanese. No abstract available.

7

Computing highly specific and noise-tolerant oligomers efficiently.

Yamada T, Morishita S. Yamada T, et al. J Bioinform Comput Biol. 2004 Mar;2(1):21-46. doi: 10.1142/s0219720004000454. J Bioinform Comput Biol. 2004. PMID: 15272431

8

Computing highly specific and mismatch tolerant oligomers efficiently.

Yamada T, Morishita S. Yamada T, et al. Proc IEEE Comput Soc Bioinform Conf. 2003;2:316-25. Proc IEEE Comput Soc Bioinform Conf. 2003. PMID: 16452807

9

UTGB/medaka: genomic resource database for medaka biology.

Ahsan B, Kobayashi D, Yamada T, Kasahara M, Sasaki S, Saito TL, Nagayasu Y, Doi K, Nakatani Y, Qu W, Jindo T, Shimada A, Naruse K, Toyoda A, Kuroki Y, Fujiyama A, Sasaki T, Shimizu A, Asakawa S, Shimizu N, Hashimoto S, Yang J, Lee Y, Matsushima K, Sugano S, Sakaizumi M, Narita T, Ohishi K, Haga S, Ohta F, Nomoto H, Nogata K, Morishita T, Endo T, Shin-I T, Takeda H, Kohara Y, Morishita S. Ahsan B, et al. Among authors: yamada t. Nucleic Acids Res. 2008 Jan;36(Database issue):D747-52. doi: 10.1093/nar/gkm765. Epub 2007 Oct 11. Nucleic Acids Res. 2008. PMID: 17932069 Free PMC article.

10

5'SAGE: 5'-end Serial Analysis of Gene Expression database.

Kasai Y, Hashimoto S, Yamada T, Sese J, Sugano S, Matsushima K, Morishita S. Kasai Y, et al. Among authors: yamada t. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D550-2. doi: 10.1093/nar/gki085. Nucleic Acids Res. 2005. PMID: 15608259 Free PMC article.

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