A Novel Missense Mutation in TNNI3K Causes Recessively Inherited Cardiac Conduction Disease in a Consanguineous Pakistani Family

Genes (Basel). 2021 Aug 21;12(8):1282. doi: 10.3390/genes12081282.

Abstract

Cardiac conduction disease (CCD), which causes altered electrical impulse propagation in the heart, is a life-threatening condition with high morbidity and mortality. It exhibits genetic and clinical heterogeneity with diverse pathomechanisms, but in most cases, it disrupts the synchronous activity of impulse-generating nodes and impulse-conduction underlying the normal heartbeat. In this study, we investigated a consanguineous Pakistani family comprised of four patients with CCD. We applied whole exome sequencing (WES) and co-segregation analysis, which identified a novel homozygous missense mutation (c.1531T>C;(p.Ser511Pro)) in the highly conserved kinase domain of the cardiac troponin I-interacting kinase (TNNI3K) encoding gene. The behaviors of mutant and native TNNI3K were compared by performing all-atom long-term molecular dynamics simulations, which revealed changes at the protein surface and in the hydrogen bond network. Furthermore, intra and intermolecular interaction analyses revealed that p.Ser511Pro causes structural variation in the ATP-binding pocket and the homodimer interface. These findings suggest p.Ser511Pro to be a pathogenic variant. Our study provides insights into how the variant perturbs the TNNI3K structure-function relationship, leading to a disease state. This is the first report of a recessive mutation in TNNI3K and the first mutation in this gene identified in the Pakistani population.

Keywords: TNNI3K; cardiac conduction; missense mutation; molecular modeling simulation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adolescent
  • Adult
  • Cardiac Conduction System Disease / epidemiology
  • Cardiac Conduction System Disease / genetics*
  • Cardiac Conduction System Disease / pathology
  • Child
  • Consanguinity
  • Female
  • Genetic Predisposition to Disease*
  • Homozygote
  • Humans
  • Male
  • Middle Aged
  • Mutation, Missense / genetics
  • Pakistan / epidemiology
  • Pedigree
  • Protein Interaction Domains and Motifs / genetics
  • Protein Serine-Threonine Kinases / genetics*
  • Protein Serine-Threonine Kinases / ultrastructure
  • Transcription Factors / genetics
  • Troponin I / genetics*
  • Troponin I / ultrastructure
  • Whole Exome Sequencing
  • Young Adult

Substances

  • Transcription Factors
  • Troponin I
  • Protein Serine-Threonine Kinases
  • TNNI3K protein, human