Molecular cloning of a novel human CC chemokine EBI1-ligand chemokine that is a specific functional ligand for EBI1, CCR7

J Biol Chem. 1997 May 23;272(21):13803-9. doi: 10.1074/jbc.272.21.13803.


By searching the expressed sequence tag (EST) data base, we identified partial cDNA sequences encoding a novel human CC chemokine. We determined the complete cDNA sequence that encodes a highly basic polypeptide of a total 98 amino acids with 20 to 30% identity to other human CC chemokines. We termed this novel chemokine from EBI1-Ligand Chemokine as ELC (see below). The ELC mRNA was most strongly expressed in the thymus and lymph nodes. Recombinant ELC protein was expressed as a fusion protein with the Flag tag (ELC-Flag). For receptor-binding assays, recombinant ELC protein fused with the secreted form of alkaline phosphatase (SEAP) was used. By stably expressing five CC chemokine receptors (CCR1 to 5) and five orphan receptors, ELC-SEAP was found to bind specifically to an orphan receptor EBI1. Only ELC-Flag, but not MCP-1, MCP-2, MCP-3, eotaxin, MIP-1alpha, MIP-1beta, RANTES (regulated on activation normal T cell expressed and secreted), thymus and activation-regulated chemokine (TARC), or liver and activation-regulated chemokine (LARC), competed with ELC-SEAP for EBI1. ELC-Flag-induced transient calcium mobilization and chemotactic responses in EBI1-transfected cells. ELC-Flag also induced chemotaxis in HUT78 cells expressing endogenous EBI1 at high levels. By somatic hybrid and radiation hybrid analyses, the gene for ELC (SCYA19) was mapped to chromosome 9p13 instead of chromosome 17q11.2 where the genes for CC chemokines are clustered. Taken together, ELC is a highly specific ligand for EBI1, which is known to be expressed in activated B and T lymphocytes and strongly up-regulated in B cells infected with Epstein-Barr virus and T cells infected with herpesvirus 6 or 7. ELC and EBI1 may thus play roles in migration and homing of normal lymphocytes, as well as in pathophysiology of lymphocytes infected with these herpesviruses. We propose EBI1 to be designated as CCR7.

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Calcium / metabolism
  • Cell Line
  • Chemokine CCL19
  • Chemokines / genetics*
  • Chemokines / metabolism
  • Chemokines, CC*
  • Chemotaxis
  • Chromosome Banding
  • Chromosome Mapping
  • Chromosomes, Human, Pair 9*
  • Cloning, Molecular
  • DNA, Complementary / chemistry
  • Databases, Factual
  • Gene Library
  • Humans
  • Ligands
  • Molecular Sequence Data
  • RNA, Messenger / metabolism
  • Receptors, CCR7
  • Receptors, Cell Surface / metabolism*
  • Receptors, Chemokine*
  • Recombinant Proteins / metabolism
  • Transfection


  • CCL19 protein, human
  • CCR7 protein, human
  • Chemokine CCL19
  • Chemokines
  • Chemokines, CC
  • DNA, Complementary
  • Ligands
  • RNA, Messenger
  • Receptors, CCR7
  • Receptors, Cell Surface
  • Receptors, Chemokine
  • Recombinant Proteins
  • Calcium

Associated data

  • GENBANK/AB000887