An on-line archive of reconstructed hippocampal neurons

J Neurosci Methods. 1998 Oct 1;84(1-2):49-54. doi: 10.1016/s0165-0270(98)00091-0.


We have developed an on-line archive of neuronal geometry to encourage the use of realistic dendritic structures in morphometry and for neuronal modeling, located at web address Initially we have included full three-dimensional representations of 87 neurons from the hippocampus, obtained following intracellular staining with biocytin and reconstruction using Neurolucida. The archive system includes a structure editor for correcting any departures from valid branching geometry and which allows simple errors in the digitisation to be corrected. The editor employs a platform-independent file format which enforces the constraints that there should be no isolated branches and no closed loops. It also incorporates software for interconversion between the archive format and those used by various neuronal reconstruction and modelling packages. The raw data from digitisation software can be included in the archive as well as edited reconstructions and any further information available. Cross-referenced tables and indexes are updated automatically and are sorted according to a number of fields including the cell type, contributor, submission date and published reference. Both the archive and the structure editor should facilitate the quantitative use of full three-dimensional reconstructions of neurons from the hippocampus and other brain regions.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Databases, Factual
  • Dendrites / ultrastructure*
  • Hippocampus / cytology*
  • Image Processing, Computer-Assisted / methods
  • Internet
  • Lysine / analogs & derivatives
  • Models, Anatomic
  • Models, Neurological
  • Neurons / cytology*
  • Neurons / ultrastructure
  • Pyramidal Cells / cytology*
  • Pyramidal Cells / ultrastructure
  • Reproducibility of Results
  • Software


  • biocytin
  • Lysine