Perahia D - Search Results

1

New insights into the allosteric mechanism of human hemoglobin from molecular dynamics simulations.

Mouawad L, Perahia D, Robert CH, Guilbert C. Mouawad L, et al. Among authors: perahia d. Biophys J. 2002 Jun;82(6):3224-45. doi: 10.1016/S0006-3495(02)75665-8. Biophys J. 2002. PMID: 12023247 Free PMC article.

2

Internal cavities and ligand passageways in human hemoglobin characterized by molecular dynamics simulations.

Mouawad L, Maréchal JD, Perahia D. Mouawad L, et al. Among authors: perahia d. Biochim Biophys Acta. 2005 Aug 5;1724(3):385-93. doi: 10.1016/j.bbagen.2005.05.014. Biochim Biophys Acta. 2005. PMID: 15963643

3

Motions in hemoglobin studied by normal mode analysis and energy minimization: evidence for the existence of tertiary T-like, quaternary R-like intermediate structures.

Mouawad L, Perahia D. Mouawad L, et al. Among authors: perahia d. J Mol Biol. 1996 May 3;258(2):393-410. doi: 10.1006/jmbi.1996.0257. J Mol Biol. 1996. PMID: 8627633

4

Molecular dynamics of the FixJ receiver domain: movement of the beta4-alpha4 loop correlates with the in and out flip of Phe101.

Roche P, Mouawad L, Perahia D, Samama JP, Kahn D. Roche P, et al. Among authors: perahia d. Protein Sci. 2002 Nov;11(11):2622-30. doi: 10.1110/ps.0218802. Protein Sci. 2002. PMID: 12381845 Free PMC article.

5

Integrating three views of Arf1 activation dynamics.

Robert CH, Cherfils J, Mouawad L, Perahia D. Robert CH, et al. Among authors: perahia d. J Mol Biol. 2004 Apr 2;337(4):969-83. doi: 10.1016/j.jmb.2004.01.052. J Mol Biol. 2004. PMID: 15033364

6

A DFT study on the relative affinity for oxygen of the alpha and beta subunits of hemoglobin.

Maréchal JD, Maseras F, Lledós A, Mouawad L, Perahia D. Maréchal JD, et al. Among authors: perahia d. J Comput Chem. 2006 Sep;27(12):1446-53. doi: 10.1002/jcc.20427. J Comput Chem. 2006. PMID: 16807972

7

Odorant binding and conformational dynamics in the odorant-binding protein.

Hajjar E, Perahia D, Débat H, Nespoulous C, Robert CH. Hajjar E, et al. Among authors: perahia d. J Biol Chem. 2006 Oct 6;281(40):29929-37. doi: 10.1074/jbc.M604869200. Epub 2006 Jul 18. J Biol Chem. 2006. PMID: 16849331 Free article.

8

CO migration pathways in cytochrome P450cam studied by molecular dynamics simulations.

Mouawad L, Tetreau C, Abdel-Azeim S, Perahia D, Lavalette D. Mouawad L, et al. Among authors: perahia d. Protein Sci. 2007 May;16(5):781-94. doi: 10.1110/ps.062374707. Epub 2007 Mar 30. Protein Sci. 2007. PMID: 17400927 Free PMC article.

9

Computation of low-frequency normal modes in macromolecules: improvements to the method of diagonalization in a mixed basis and application to hemoglobin.

Perahia D, Mouawad L. Perahia D, et al. Comput Chem. 1995 Sep;19(3):241-6. doi: 10.1016/0097-8485(95)00011-g. Comput Chem. 1995. PMID: 7551557

The method of diagonalization in a mixed basis (DIMB) that was published previously (Mouawad.), L. and Perahia D., Biopolymers 33, 599, 1993), allows the computation of the low-frequency vibrational modes for large macromolecules. ...

The method of diagonalization in a mixed basis (DIMB) that was published previously (Mouawad.), L. and Perahia D., Biopolymers …

10

Unfolding of hen egg lysozyme by molecular dynamics simulations at 300K: insight into the role of the interdomain interface.

Gilquin B, Guilbert C, Perahia D. Gilquin B, et al. Among authors: perahia d. Proteins. 2000 Oct 1;41(1):58-74. Proteins. 2000. PMID: 10944394

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