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Page 1
Experimental determination and system level analysis of essential genes in Escherichia coli MG1655.
Gerdes SY, Scholle MD, Campbell JW, Balázsi G, Ravasz E, Daugherty MD, Somera AL, Kyrpides NC, Anderson I, Gelfand MS, Bhattacharya A, Kapatral V, D'Souza M, Baev MV, Grechkin Y, Mseeh F, Fonstein MY, Overbeek R, Barabási AL, Oltvai ZN, Osterman AL. Gerdes SY, et al. Among authors: fonstein my. J Bacteriol. 2003 Oct;185(19):5673-84. doi: 10.1128/JB.185.19.5673-5684.2003. J Bacteriol. 2003. PMID: 13129938 Free PMC article.
From genetic footprinting to antimicrobial drug targets: examples in cofactor biosynthetic pathways.
Gerdes SY, Scholle MD, D'Souza M, Bernal A, Baev MV, Farrell M, Kurnasov OV, Daugherty MD, Mseeh F, Polanuyer BM, Campbell JW, Anantha S, Shatalin KY, Chowdhury SA, Fonstein MY, Osterman AL. Gerdes SY, et al. Among authors: fonstein my. J Bacteriol. 2002 Aug;184(16):4555-72. doi: 10.1128/JB.184.16.4555-4572.2002. J Bacteriol. 2002. PMID: 12142426 Free PMC article.
Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586.
Kapatral V, Anderson I, Ivanova N, Reznik G, Los T, Lykidis A, Bhattacharyya A, Bartman A, Gardner W, Grechkin G, Zhu L, Vasieva O, Chu L, Kogan Y, Chaga O, Goltsman E, Bernal A, Larsen N, D'Souza M, Walunas T, Pusch G, Haselkorn R, Fonstein M, Kyrpides N, Overbeek R. Kapatral V, et al. J Bacteriol. 2002 Apr;184(7):2005-18. doi: 10.1128/JB.184.7.2005-2018.2002. J Bacteriol. 2002. PMID: 11889109 Free PMC article.
The ERGO genome analysis and discovery system.
Overbeek R, Larsen N, Walunas T, D'Souza M, Pusch G, Selkov E Jr, Liolios K, Joukov V, Kaznadzey D, Anderson I, Bhattacharyya A, Burd H, Gardner W, Hanke P, Kapatral V, Mikhailova N, Vasieva O, Osterman A, Vonstein V, Fonstein M, Ivanova N, Kyrpides N. Overbeek R, et al. Nucleic Acids Res. 2003 Jan 1;31(1):164-71. doi: 10.1093/nar/gkg148. Nucleic Acids Res. 2003. PMID: 12519973 Free PMC article.
Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis.
Ivanova N, Sorokin A, Anderson I, Galleron N, Candelon B, Kapatral V, Bhattacharyya A, Reznik G, Mikhailova N, Lapidus A, Chu L, Mazur M, Goltsman E, Larsen N, D'Souza M, Walunas T, Grechkin Y, Pusch G, Haselkorn R, Fonstein M, Ehrlich SD, Overbeek R, Kyrpides N. Ivanova N, et al. Nature. 2003 May 1;423(6935):87-91. doi: 10.1038/nature01582. Nature. 2003. PMID: 12721630
Essential genes on metabolic maps.
Gerdes S, Edwards R, Kubal M, Fonstein M, Stevens R, Osterman A. Gerdes S, et al. Curr Opin Biotechnol. 2006 Oct;17(5):448-56. doi: 10.1016/j.copbio.2006.08.006. Epub 2006 Sep 15. Curr Opin Biotechnol. 2006. PMID: 16978855 Review.
Comparative genome analysis of Bacillus cereus group genomes with Bacillus subtilis.
Anderson I, Sorokin A, Kapatral V, Reznik G, Bhattacharya A, Mikhailova N, Burd H, Joukov V, Kaznadzey D, Walunas T, Markd'Souza, Larsen N, Pusch G, Liolios K, Grechkin Y, Lapidus A, Goltsman E, Chu L, Fonstein M, Ehrlich SD, Overbeek R, Kyrpides N, Ivanova N. Anderson I, et al. FEMS Microbiol Lett. 2005 Sep 15;250(2):175-84. doi: 10.1016/j.femsle.2005.07.008. FEMS Microbiol Lett. 2005. PMID: 16099605
The use of gene clusters to infer functional coupling.
Overbeek R, Fonstein M, D'Souza M, Pusch GD, Maltsev N. Overbeek R, et al. Proc Natl Acad Sci U S A. 1999 Mar 16;96(6):2896-901. doi: 10.1073/pnas.96.6.2896. Proc Natl Acad Sci U S A. 1999. PMID: 10077608 Free PMC article.
26 results