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Assessing computational tools for the discovery of transcription factor binding sites.
Tompa M, Li N, Bailey TL, Church GM, De Moor B, Eskin E, Favorov AV, Frith MC, Fu Y, Kent WJ, Makeev VJ, Mironov AA, Noble WS, Pavesi G, Pesole G, Régnier M, Simonis N, Sinha S, Thijs G, van Helden J, Vandenbogaert M, Weng Z, Workman C, Ye C, Zhu Z. Tompa M, et al. Among authors: church gm. Nat Biotechnol. 2005 Jan;23(1):137-44. doi: 10.1038/nbt1053. Nat Biotechnol. 2005. PMID: 15637633 Free article.
Engineering an allosteric transcription factor to respond to new ligands.
Taylor ND, Garruss AS, Moretti R, Chan S, Arbing MA, Cascio D, Rogers JK, Isaacs FJ, Kosuri S, Baker D, Fields S, Church GM, Raman S. Taylor ND, et al. Among authors: church gm. Nat Methods. 2016 Feb;13(2):177-83. doi: 10.1038/nmeth.3696. Epub 2015 Dec 21. Nat Methods. 2016. PMID: 26689263 Free PMC article.
A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies.
Kuo WP, Liu F, Trimarchi J, Punzo C, Lombardi M, Sarang J, Whipple ME, Maysuria M, Serikawa K, Lee SY, McCrann D, Kang J, Shearstone JR, Burke J, Park DJ, Wang X, Rector TL, Ricciardi-Castagnoli P, Perrin S, Choi S, Bumgarner R, Kim JH, Short GF 3rd, Freeman MW, Seed B, Jensen R, Church GM, Hovig E, Cepko CL, Park P, Ohno-Machado L, Jenssen TK. Kuo WP, et al. Among authors: church gm. Nat Biotechnol. 2006 Jul;24(7):832-40. doi: 10.1038/nbt1217. Epub 2006 Jul 2. Nat Biotechnol. 2006. PMID: 16823376
Genome engineering.
Carr PA, Church GM. Carr PA, et al. Among authors: church gm. Nat Biotechnol. 2009 Dec;27(12):1151-62. doi: 10.1038/nbt.1590. Nat Biotechnol. 2009. PMID: 20010598 Review.
608 results