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Refinement of optical map assemblies.
Valouev A, Zhang Y, Schwartz DC, Waterman MS. Valouev A, et al. Bioinformatics. 2006 May 15;22(10):1217-24. doi: 10.1093/bioinformatics/btl063. Epub 2006 Feb 24. Bioinformatics. 2006. PMID: 16500933
RESULTS: We present a computationally efficient model-based method for improving quality of such assemblies. ...AVAILABILITY: Code is available from www.cmb.usc.edu/people/valouev/...
RESULTS: We present a computationally efficient model-based method for improving quality of such assemblies. ...AVAILABILITY: Code is …
A quantile method for sizing optical maps.
Li H, Valouev A, Schwartz DC, Waterman MS, Li LM. Li H, et al. Among authors: valouev a. J Comput Biol. 2007 Apr;14(3):255-66. doi: 10.1089/cmb.2006.0006. J Comput Biol. 2007. PMID: 17563310
Alignment of optical maps.
Valouev A, Li L, Liu YC, Schwartz DC, Yang Y, Zhang Y, Waterman MS. Valouev A, et al. J Comput Biol. 2006 Mar;13(2):442-62. doi: 10.1089/cmb.2006.13.442. J Comput Biol. 2006. PMID: 16597251
High-resolution human genome structure by single-molecule analysis.
Teague B, Waterman MS, Goldstein S, Potamousis K, Zhou S, Reslewic S, Sarkar D, Valouev A, Churas C, Kidd JM, Kohn S, Runnheim R, Lamers C, Forrest D, Newton MA, Eichler EE, Kent-First M, Surti U, Livny M, Schwartz DC. Teague B, et al. Among authors: valouev a. Proc Natl Acad Sci U S A. 2010 Jun 15;107(24):10848-53. doi: 10.1073/pnas.0914638107. Epub 2010 Jun 1. Proc Natl Acad Sci U S A. 2010. PMID: 20534489 Free PMC article.
21 results