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Whole-plant growth stage ontology for angiosperms and its application in plant biology.
Pujar A, Jaiswal P, Kellogg EA, Ilic K, Vincent L, Avraham S, Stevens P, Zapata F, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Ware D, McCouch S. Pujar A, et al. Among authors: schaeffer m. Plant Physiol. 2006 Oct;142(2):414-28. doi: 10.1104/pp.106.085720. Epub 2006 Aug 11. Plant Physiol. 2006. PMID: 16905665 Free PMC article.
Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages.
Jaiswal P, Avraham S, Ilic K, Kellogg EA, McCouch S, Pujar A, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Stevens P, Vincent L, Ware D, Zapata F. Jaiswal P, et al. Among authors: schaeffer m. Comp Funct Genomics. 2005;6(7-8):388-97. doi: 10.1002/cfg.496. Comp Funct Genomics. 2005. PMID: 18629207 Free PMC article.
The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations.
Avraham S, Tung CW, Ilic K, Jaiswal P, Kellogg EA, McCouch S, Pujar A, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Stevens P, Vincent L, Zapata F, Ware D. Avraham S, et al. Among authors: schaeffer m. Nucleic Acids Res. 2008 Jan;36(Database issue):D449-54. doi: 10.1093/nar/gkm908. Nucleic Acids Res. 2008. PMID: 18194960 Free PMC article.
The plant ontology as a tool for comparative plant anatomy and genomic analyses.
Cooper L, Walls RL, Elser J, Gandolfo MA, Stevenson DW, Smith B, Preece J, Athreya B, Mungall CJ, Rensing S, Hiss M, Lang D, Reski R, Berardini TZ, Li D, Huala E, Schaeffer M, Menda N, Arnaud E, Shrestha R, Yamazaki Y, Jaiswal P. Cooper L, et al. Among authors: schaeffer m. Plant Cell Physiol. 2013 Feb;54(2):e1. doi: 10.1093/pcp/pcs163. Epub 2012 Dec 5. Plant Cell Physiol. 2013. PMID: 23220694 Free PMC article.
The physical and genetic framework of the maize B73 genome.
Wei F, Zhang J, Zhou S, He R, Schaeffer M, Collura K, Kudrna D, Faga BP, Wissotski M, Golser W, Rock SM, Graves TA, Fulton RS, Coe E, Schnable PS, Schwartz DC, Ware D, Clifton SW, Wilson RK, Wing RA. Wei F, et al. Among authors: schaeffer m. PLoS Genet. 2009 Nov;5(11):e1000715. doi: 10.1371/journal.pgen.1000715. Epub 2009 Nov 20. PLoS Genet. 2009. PMID: 19936061 Free PMC article.
Overview of the gene ontology task at BioCreative IV.
Mao Y, Van Auken K, Li D, Arighi CN, McQuilton P, Hayman GT, Tweedie S, Schaeffer ML, Laulederkind SJ, Wang SJ, Gobeill J, Ruch P, Luu AT, Kim JJ, Chiang JH, Chen YD, Yang CJ, Liu H, Zhu D, Li Y, Yu H, Emadzadeh E, Gonzalez G, Chen JM, Dai HJ, Lu Z. Mao Y, et al. Database (Oxford). 2014 Aug 25;2014:bau086. doi: 10.1093/database/bau086. Print 2014. Database (Oxford). 2014. PMID: 25157073 Free PMC article.
A pan-genomic approach to genome databases using maize as a model system.
Woodhouse MR, Cannon EK, Portwood JL 2nd, Harper LC, Gardiner JM, Schaeffer ML, Andorf CM. Woodhouse MR, et al. Among authors: schaeffer ml. BMC Plant Biol. 2021 Aug 20;21(1):385. doi: 10.1186/s12870-021-03173-5. BMC Plant Biol. 2021. PMID: 34416864 Free PMC article.
407 results