Whitford PC - Search Results

1

A novel disulfide bond in the SH2 Domain of the C-terminal Src kinase controls catalytic activity.

Mills JE, Whitford PC, Shaffer J, Onuchic JN, Adams JA, Jennings PA. Mills JE, et al. Among authors: whitford pc. J Mol Biol. 2007 Feb 2;365(5):1460-8. doi: 10.1016/j.jmb.2006.10.076. Epub 2006 Oct 26. J Mol Biol. 2007. PMID: 17137590 Free PMC article.

2

Conformational transitions of adenylate kinase: switching by cracking.

Whitford PC, Miyashita O, Levy Y, Onuchic JN. Whitford PC, et al. J Mol Biol. 2007 Mar 9;366(5):1661-71. doi: 10.1016/j.jmb.2006.11.085. Epub 2006 Dec 5. J Mol Biol. 2007. PMID: 17217965 Free PMC article.

3

Mutations as trapdoors to two competing native conformations of the Rop-dimer.

Schug A, Whitford PC, Levy Y, Onuchic JN. Schug A, et al. Among authors: whitford pc. Proc Natl Acad Sci U S A. 2007 Nov 6;104(45):17674-9. doi: 10.1073/pnas.0706077104. Epub 2007 Oct 29. Proc Natl Acad Sci U S A. 2007. PMID: 17968016 Free PMC article.

4

Conformational transitions in adenylate kinase. Allosteric communication reduces misligation.

Whitford PC, Gosavi S, Onuchic JN. Whitford PC, et al. J Biol Chem. 2008 Jan 25;283(4):2042-8. doi: 10.1074/jbc.M707632200. Epub 2007 Nov 11. J Biol Chem. 2008. PMID: 17998210 Free article.

5

Extracting function from a beta-trefoil folding motif.

Gosavi S, Whitford PC, Jennings PA, Onuchic JN. Gosavi S, et al. Among authors: whitford pc. Proc Natl Acad Sci U S A. 2008 Jul 29;105(30):10384-9. doi: 10.1073/pnas.0801343105. Epub 2008 Jul 23. Proc Natl Acad Sci U S A. 2008. PMID: 18650393 Free PMC article.

6

An all-atom structure-based potential for proteins: bridging minimal models with all-atom empirical forcefields.

Whitford PC, Noel JK, Gosavi S, Schug A, Sanbonmatsu KY, Onuchic JN. Whitford PC, et al. Proteins. 2009 May 1;75(2):430-41. doi: 10.1002/prot.22253. Proteins. 2009. PMID: 18837035 Free PMC article.

7

Nonlocal helix formation is key to understanding S-adenosylmethionine-1 riboswitch function.

Whitford PC, Schug A, Saunders J, Hennelly SP, Onuchic JN, Sanbonmatsu KY. Whitford PC, et al. Biophys J. 2009 Jan;96(2):L7-9. doi: 10.1016/j.bpj.2008.10.033. Biophys J. 2009. PMID: 19167285 Free PMC article.

8

Energy landscape along an enzymatic reaction trajectory: hinges or cracks?

Whitford PC, Onuchic JN, Wolynes PG. Whitford PC, et al. HFSP J. 2008 Apr;2(2):61-4. doi: 10.2976/1.2894846. Epub 2008 Mar 24. HFSP J. 2008. PMID: 19404472 Free PMC article.

9

Accommodation of aminoacyl-tRNA into the ribosome involves reversible excursions along multiple pathways.

Whitford PC, Geggier P, Altman RB, Blanchard SC, Onuchic JN, Sanbonmatsu KY. Whitford PC, et al. RNA. 2010 Jun;16(6):1196-204. doi: 10.1261/rna.2035410. Epub 2010 Apr 28. RNA. 2010. PMID: 20427512 Free PMC article.

10

SMOG@ctbp: simplified deployment of structure-based models in GROMACS.

Noel JK, Whitford PC, Sanbonmatsu KY, Onuchic JN. Noel JK, et al. Among authors: whitford pc. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W657-61. doi: 10.1093/nar/gkq498. Epub 2010 Jun 4. Nucleic Acids Res. 2010. PMID: 20525782 Free PMC article.

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