Birol I - Search Results

1

Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies.

Hajirasouliha I, Hormozdiari F, Sahinalp SC, Birol I. Hajirasouliha I, et al. Among authors: birol i. Bioinformatics. 2008 Jul 1;24(13):i32-40. doi: 10.1093/bioinformatics/btn173. Bioinformatics. 2008. PMID: 18586730 Free PMC article.

2

Genomic virulence features of Beauveria bassiana as a biocontrol agent for the mountain pine beetle population.

Li JX, Fernandez KX, Ritland C, Jancsik S, Engelhardt DB, Coombe L, Warren RL, van Belkum MJ, Carroll AL, Vederas JC, Bohlmann J, Birol I. Li JX, et al. Among authors: birol i. BMC Genomics. 2023 Jul 10;24(1):390. doi: 10.1186/s12864-023-09473-4. BMC Genomics. 2023. PMID: 37430186 Free PMC article.

3

Models and data of AMPlify: a deep learning tool for antimicrobial peptide prediction.

Li C, Warren RL, Birol I. Li C, et al. Among authors: birol i. BMC Res Notes. 2023 Feb 2;16(1):11. doi: 10.1186/s13104-023-06279-1. BMC Res Notes. 2023. PMID: 36732807 Free PMC article.

4

Associating Biological Activity and Predicted Structure of Antimicrobial Peptides from Amphibians and Insects.

Richter A, Sutherland D, Ebrahimikondori H, Babcock A, Louie N, Li C, Coombe L, Lin D, Warren RL, Yanai A, Kotkoff M, Helbing CC, Hof F, Hoang LMN, Birol I. Richter A, et al. Among authors: birol i. Antibiotics (Basel). 2022 Nov 27;11(12):1710. doi: 10.3390/antibiotics11121710. Antibiotics (Basel). 2022. PMID: 36551368 Free PMC article.

5

Detection and characterization of novel sequence insertions using paired-end next-generation sequencing.

Hajirasouliha I, Hormozdiari F, Alkan C, Kidd JM, Birol I, Eichler EE, Sahinalp SC. Hajirasouliha I, et al. Among authors: birol i. Bioinformatics. 2010 May 15;26(10):1277-83. doi: 10.1093/bioinformatics/btq152. Epub 2010 Apr 12. Bioinformatics. 2010. PMID: 20385726 Free PMC article.

6

mrsFAST: a cache-oblivious algorithm for short-read mapping.

Hach F, Hormozdiari F, Alkan C, Hormozdiari F, Birol I, Eichler EE, Sahinalp SC. Hach F, et al. Among authors: birol i. Nat Methods. 2010 Aug;7(8):576-7. doi: 10.1038/nmeth0810-576. Nat Methods. 2010. PMID: 20676076 Free PMC article. No abstract available.

7

Dissect: detection and characterization of novel structural alterations in transcribed sequences.

Yorukoglu D, Hach F, Swanson L, Collins CC, Birol I, Sahinalp SC. Yorukoglu D, et al. Among authors: birol i. Bioinformatics. 2012 Jun 15;28(12):i179-87. doi: 10.1093/bioinformatics/bts214. Bioinformatics. 2012. PMID: 22689759 Free PMC article.

8

Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data.

Birol I, Raymond A, Jackman SD, Pleasance S, Coope R, Taylor GA, Yuen MM, Keeling CI, Brand D, Vandervalk BP, Kirk H, Pandoh P, Moore RA, Zhao Y, Mungall AJ, Jaquish B, Yanchuk A, Ritland C, Boyle B, Bousquet J, Ritland K, Mackay J, Bohlmann J, Jones SJ. Birol I, et al. Bioinformatics. 2013 Jun 15;29(12):1492-7. doi: 10.1093/bioinformatics/btt178. Epub 2013 May 22. Bioinformatics. 2013. PMID: 23698863 Free PMC article.

9

Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies.

Swanson L, Robertson G, Mungall KL, Butterfield YS, Chiu R, Corbett RD, Docking TR, Hogge D, Jackman SD, Moore RA, Mungall AJ, Nip KM, Parker JD, Qian JQ, Raymond A, Sung S, Tam A, Thiessen N, Varhol R, Wang S, Yorukoglu D, Zhao Y, Hoodless PA, Sahinalp SC, Karsan A, Birol I. Swanson L, et al. Among authors: birol i. BMC Genomics. 2013 Aug 14;14:550. doi: 10.1186/1471-2164-14-550. BMC Genomics. 2013. PMID: 23941359 Free PMC article.

10

BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters.

Chu J, Sadeghi S, Raymond A, Jackman SD, Nip KM, Mar R, Mohamadi H, Butterfield YS, Robertson AG, Birol I. Chu J, et al. Among authors: birol i. Bioinformatics. 2014 Dec 1;30(23):3402-4. doi: 10.1093/bioinformatics/btu558. Epub 2014 Aug 20. Bioinformatics. 2014. PMID: 25143290 Free PMC article.

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