Karplus PA - Search Results

1

Catalytic cycle of human glutathione reductase near 1 A resolution.

Berkholz DS, Faber HR, Savvides SN, Karplus PA. Berkholz DS, et al. Among authors: karplus pa. J Mol Biol. 2008 Oct 3;382(2):371-84. doi: 10.1016/j.jmb.2008.06.083. Epub 2008 Jul 7. J Mol Biol. 2008. PMID: 18638483 Free PMC article.

2

Glutathione reductase of the malarial parasite Plasmodium falciparum: crystal structure and inhibitor development.

Sarma GN, Savvides SN, Becker K, Schirmer M, Schirmer RH, Karplus PA. Sarma GN, et al. Among authors: karplus pa. J Mol Biol. 2003 May 9;328(4):893-907. doi: 10.1016/s0022-2836(03)00347-4. J Mol Biol. 2003. PMID: 12729762

3

Crystal structure of the antioxidant enzyme glutathione reductase inactivated by peroxynitrite.

Savvides SN, Scheiwein M, Bohme CC, Arteel GE, Karplus PA, Becker K, Schirmer RH. Savvides SN, et al. Among authors: karplus pa. J Biol Chem. 2002 Jan 25;277(4):2779-84. doi: 10.1074/jbc.M108190200. Epub 2001 Nov 8. J Biol Chem. 2002. PMID: 11705998 Free article.

4

Conformation dependence of backbone geometry in proteins.

Berkholz DS, Shapovalov MV, Dunbrack RL Jr, Karplus PA. Berkholz DS, et al. Among authors: karplus pa. Structure. 2009 Oct 14;17(10):1316-25. doi: 10.1016/j.str.2009.08.012. Structure. 2009. PMID: 19836332 Free PMC article.

5

Using a conformation-dependent stereochemical library improves crystallographic refinement of proteins.

Tronrud DE, Berkholz DS, Karplus PA. Tronrud DE, et al. Among authors: karplus pa. Acta Crystallogr D Biol Crystallogr. 2010 Jul;66(Pt 7):834-42. doi: 10.1107/S0907444910019207. Epub 2010 Jun 19. Acta Crystallogr D Biol Crystallogr. 2010. PMID: 20606264 Free PMC article.

6

(φ,ψ)₂ motifs: a purely conformation-based fine-grained enumeration of protein parts at the two-residue level.

Hollingsworth SA, Lewis MC, Berkholz DS, Wong WK, Karplus PA. Hollingsworth SA, et al. Among authors: karplus pa. J Mol Biol. 2012 Feb 10;416(1):78-93. doi: 10.1016/j.jmb.2011.12.022. Epub 2011 Dec 16. J Mol Biol. 2012. PMID: 22198294 Free PMC article.

7

Nonplanar peptide bonds in proteins are common and conserved but not biased toward active sites.

Berkholz DS, Driggers CM, Shapovalov MV, Dunbrack RL Jr, Karplus PA. Berkholz DS, et al. Among authors: karplus pa. Proc Natl Acad Sci U S A. 2012 Jan 10;109(2):449-53. doi: 10.1073/pnas.1107115108. Epub 2011 Dec 23. Proc Natl Acad Sci U S A. 2012. PMID: 22198840 Free PMC article.

8

Kinetics and crystallographic analysis of human glutathione reductase in complex with a xanthene inhibitor.

Savvides SN, Karplus PA. Savvides SN, et al. Among authors: karplus pa. J Biol Chem. 1996 Apr 5;271(14):8101-7. doi: 10.1074/jbc.271.14.8101. J Biol Chem. 1996. PMID: 8626496 Free article.

9

On the occurrence of linear groups in proteins.

Hollingsworth SA, Berkholz DS, Karplus PA. Hollingsworth SA, et al. Among authors: karplus pa. Protein Sci. 2009 Jun;18(6):1321-5. doi: 10.1002/pro.133. Protein Sci. 2009. PMID: 19472372 Free PMC article.

10

Protein Geometry Database: a flexible engine to explore backbone conformations and their relationships to covalent geometry.

Berkholz DS, Krenesky PB, Davidson JR, Karplus PA. Berkholz DS, et al. Among authors: karplus pa. Nucleic Acids Res. 2010 Jan;38(Database issue):D320-5. doi: 10.1093/nar/gkp1013. Epub 2009 Nov 11. Nucleic Acids Res. 2010. PMID: 19906726 Free PMC article.

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