Duitama J - Search Results

1

PrimerHunter: a primer design tool for PCR-based virus subtype identification.

Duitama J, Kumar DM, Hemphill E, Khan M, Mandoiu II, Nelson CE. Duitama J, et al. Nucleic Acids Res. 2009 May;37(8):2483-92. doi: 10.1093/nar/gkp073. Epub 2009 Mar 5. Nucleic Acids Res. 2009. PMID: 19264805 Free PMC article.

2

Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data.

Duitama J, Srivastava PK, Măndoiu II. Duitama J, et al. BMC Genomics. 2012 Apr 12;13 Suppl 2(Suppl 2):S6. doi: 10.1186/1471-2164-13-S2-S6. BMC Genomics. 2012. PMID: 22537301 Free PMC article.

3

Linkage disequilibrium based genotype calling from low-coverage shotgun sequencing reads.

Duitama J, Kennedy J, Dinakar S, Hernández Y, Wu Y, Măndoiu II. Duitama J, et al. BMC Bioinformatics. 2011 Feb 15;12 Suppl 1(Suppl 1):S53. doi: 10.1186/1471-2105-12-S1-S53. BMC Bioinformatics. 2011. PMID: 21342586 Free PMC article.

4

Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity.

Duan F, Duitama J, Al Seesi S, Ayres CM, Corcelli SA, Pawashe AP, Blanchard T, McMahon D, Sidney J, Sette A, Baker BM, Mandoiu II, Srivastava PK. Duan F, et al. Among authors: duitama j. J Exp Med. 2014 Oct 20;211(11):2231-48. doi: 10.1084/jem.20141308. Epub 2014 Sep 22. J Exp Med. 2014. PMID: 25245761 Free PMC article.

5

Fosmid-based whole genome haplotyping of a HapMap trio child: evaluation of Single Individual Haplotyping techniques.

Duitama J, McEwen GK, Huebsch T, Palczewski S, Schulz S, Verstrepen K, Suk EK, Hoehe MR. Duitama J, et al. Nucleic Acids Res. 2012 Mar;40(5):2041-53. doi: 10.1093/nar/gkr1042. Epub 2011 Nov 18. Nucleic Acids Res. 2012. PMID: 22102577 Free PMC article.

6

An integrated framework for discovery and genotyping of genomic variants from high-throughput sequencing experiments.

Duitama J, Quintero JC, Cruz DF, Quintero C, Hubmann G, Foulquié-Moreno MR, Verstrepen KJ, Thevelein JM, Tohme J. Duitama J, et al. Nucleic Acids Res. 2014 Apr;42(6):e44. doi: 10.1093/nar/gkt1381. Epub 2014 Jan 11. Nucleic Acids Res. 2014. PMID: 24413664 Free PMC article.

7

Large-scale analysis of tandem repeat variability in the human genome.

Duitama J, Zablotskaya A, Gemayel R, Jansen A, Belet S, Vermeesch JR, Verstrepen KJ, Froyen G. Duitama J, et al. Nucleic Acids Res. 2014 May;42(9):5728-41. doi: 10.1093/nar/gku212. Epub 2014 Mar 20. Nucleic Acids Res. 2014. PMID: 24682812 Free PMC article.

8

NGSEP3: accurate variant calling across species and sequencing protocols.

Tello D, Gil J, Loaiza CD, Riascos JJ, Cardozo N, Duitama J. Tello D, et al. Among authors: duitama j. Bioinformatics. 2019 Nov 1;35(22):4716-4723. doi: 10.1093/bioinformatics/btz275. Bioinformatics. 2019. PMID: 31099384 Free PMC article.

9

Improved linkage analysis of Quantitative Trait Loci using bulk segregants unveils a novel determinant of high ethanol tolerance in yeast.

Duitama J, Sánchez-Rodríguez A, Goovaerts A, Pulido-Tamayo S, Hubmann G, Foulquié-Moreno MR, Thevelein JM, Verstrepen KJ, Marchal K. Duitama J, et al. BMC Genomics. 2014 Mar 19;15:207. doi: 10.1186/1471-2164-15-207. BMC Genomics. 2014. PMID: 24640961 Free PMC article.

10

Bioinformatic analysis of genotype by sequencing (GBS) data with NGSEP.

Perea C, De La Hoz JF, Cruz DF, Lobaton JD, Izquierdo P, Quintero JC, Raatz B, Duitama J. Perea C, et al. Among authors: duitama j. BMC Genomics. 2016 Aug 31;17 Suppl 5(Suppl 5):498. doi: 10.1186/s12864-016-2827-7. BMC Genomics. 2016. PMID: 27585926 Free PMC article.

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