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747 results

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Page 1
A changing of the guard.
Hugenholtz P, Kyrpides NC. Hugenholtz P, et al. Environ Microbiol. 2009 Mar;11(3):551-3. doi: 10.1111/j.1462-2920.2009.01888.x. Environ Microbiol. 2009. PMID: 19278443 No abstract available.
Focus: Synergistetes.
Hugenholtz P, Hooper SD, Kyrpides NC. Hugenholtz P, et al. Environ Microbiol. 2009 Jun;11(6):1327-9. doi: 10.1111/j.1462-2920.2009.01949.x. Environ Microbiol. 2009. PMID: 19635113 No abstract available.
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities.
García Martín H, Ivanova N, Kunin V, Warnecke F, Barry KW, McHardy AC, Yeates C, He S, Salamov AA, Szeto E, Dalin E, Putnam NH, Shapiro HJ, Pangilinan JL, Rigoutsos I, Kyrpides NC, Blackall LL, McMahon KD, Hugenholtz P. García Martín H, et al. Among authors: hugenholtz p. Nat Biotechnol. 2006 Oct;24(10):1263-9. doi: 10.1038/nbt1247. Epub 2006 Sep 24. Nat Biotechnol. 2006. PMID: 16998472 Free article.
Use of simulated data sets to evaluate the fidelity of metagenomic processing methods.
Mavromatis K, Ivanova N, Barry K, Shapiro H, Goltsman E, McHardy AC, Rigoutsos I, Salamov A, Korzeniewski F, Land M, Lapidus A, Grigoriev I, Richardson P, Hugenholtz P, Kyrpides NC. Mavromatis K, et al. Among authors: hugenholtz p. Nat Methods. 2007 Jun;4(6):495-500. doi: 10.1038/nmeth1043. Epub 2007 Apr 29. Nat Methods. 2007. PMID: 17468765 Free article.
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite.
Warnecke F, Luginbühl P, Ivanova N, Ghassemian M, Richardson TH, Stege JT, Cayouette M, McHardy AC, Djordjevic G, Aboushadi N, Sorek R, Tringe SG, Podar M, Martin HG, Kunin V, Dalevi D, Madejska J, Kirton E, Platt D, Szeto E, Salamov A, Barry K, Mikhailova N, Kyrpides NC, Matson EG, Ottesen EA, Zhang X, Hernández M, Murillo C, Acosta LG, Rigoutsos I, Tamayo G, Green BD, Chang C, Rubin EM, Mathur EJ, Robertson DE, Hugenholtz P, Leadbetter JR. Warnecke F, et al. Among authors: hugenholtz p. Nature. 2007 Nov 22;450(7169):560-5. doi: 10.1038/nature06269. Nature. 2007. PMID: 18033299 Free article.
Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii.
Mavromatis K, Ivanova N, Anderson I, Lykidis A, Hooper SD, Sun H, Kunin V, Lapidus A, Hugenholtz P, Patel B, Kyrpides NC. Mavromatis K, et al. Among authors: hugenholtz p. PLoS One. 2009;4(1):e4192. doi: 10.1371/journal.pone.0004192. Epub 2009 Jan 15. PLoS One. 2009. PMID: 19145256 Free PMC article.
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.
Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova NN, Kunin V, Goodwin L, Wu M, Tindall BJ, Hooper SD, Pati A, Lykidis A, Spring S, Anderson IJ, D'haeseleer P, Zemla A, Singer M, Lapidus A, Nolan M, Copeland A, Han C, Chen F, Cheng JF, Lucas S, Kerfeld C, Lang E, Gronow S, Chain P, Bruce D, Rubin EM, Kyrpides NC, Klenk HP, Eisen JA. Wu D, et al. Among authors: hugenholtz p. Nature. 2009 Dec 24;462(7276):1056-60. doi: 10.1038/nature08656. Nature. 2009. PMID: 20033048 Free PMC article.
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium; Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T. Bowers RM, et al. Among authors: hugenholtz p. Nat Biotechnol. 2017 Aug 8;35(8):725-731. doi: 10.1038/nbt.3893. Nat Biotechnol. 2017. PMID: 28787424 Free PMC article.
747 results