Bhardwaj N - Search Results

1

The relationship between the evolution of microRNA targets and the length of their UTRs.

Cheng C, Bhardwaj N, Gerstein M. Cheng C, et al. Among authors: bhardwaj n. BMC Genomics. 2009 Sep 14;10:431. doi: 10.1186/1471-2164-10-431. BMC Genomics. 2009. PMID: 19751524 Free PMC article.

2

Genome-wide sequence-based prediction of peripheral proteins using a novel semi-supervised learning technique.

Bhardwaj N, Gerstein M, Lu H. Bhardwaj N, et al. BMC Bioinformatics. 2010 Jan 18;11 Suppl 1(Suppl 1):S6. doi: 10.1186/1471-2105-11-S1-S6. BMC Bioinformatics. 2010. PMID: 20122235 Free PMC article.

3

Analysis of diverse regulatory networks in a hierarchical context shows consistent tendencies for collaboration in the middle levels.

Bhardwaj N, Yan KK, Gerstein MB. Bhardwaj N, et al. Proc Natl Acad Sci U S A. 2010 Apr 13;107(15):6841-6. doi: 10.1073/pnas.0910867107. Epub 2010 Mar 29. Proc Natl Acad Sci U S A. 2010. PMID: 20351254 Free PMC article.

4

Comparing genomes to computer operating systems in terms of the topology and evolution of their regulatory control networks.

Yan KK, Fang G, Bhardwaj N, Alexander RP, Gerstein M. Yan KK, et al. Among authors: bhardwaj n. Proc Natl Acad Sci U S A. 2010 May 18;107(20):9186-91. doi: 10.1073/pnas.0914771107. Epub 2010 May 3. Proc Natl Acad Sci U S A. 2010. PMID: 20439753 Free PMC article.

5

Analysis of combinatorial regulation: scaling of partnerships between regulators with the number of governed targets.

Bhardwaj N, Carson MB, Abyzov A, Yan KK, Lu H, Gerstein MB. Bhardwaj N, et al. PLoS Comput Biol. 2010 May 27;6(5):e1000755. doi: 10.1371/journal.pcbi.1000755. PLoS Comput Biol. 2010. PMID: 20523742 Free PMC article.

6

Rewiring of transcriptional regulatory networks: hierarchy, rather than connectivity, better reflects the importance of regulators.

Bhardwaj N, Kim PM, Gerstein MB. Bhardwaj N, et al. Sci Signal. 2010 Nov 2;3(146):ra79. doi: 10.1126/scisignal.2001014. Sci Signal. 2010. PMID: 21045205

7

Measuring the evolutionary rewiring of biological networks.

Shou C, Bhardwaj N, Lam HY, Yan KK, Kim PM, Snyder M, Gerstein MB. Shou C, et al. Among authors: bhardwaj n. PLoS Comput Biol. 2011 Jan 6;7(1):e1001050. doi: 10.1371/journal.pcbi.1001050. PLoS Comput Biol. 2011. PMID: 21253555 Free PMC article.

8

AlleleSeq: analysis of allele-specific expression and binding in a network framework.

Rozowsky J, Abyzov A, Wang J, Alves P, Raha D, Harmanci A, Leng J, Bjornson R, Kong Y, Kitabayashi N, Bhardwaj N, Rubin M, Snyder M, Gerstein M. Rozowsky J, et al. Among authors: bhardwaj n. Mol Syst Biol. 2011 Aug 2;7:522. doi: 10.1038/msb.2011.54. Mol Syst Biol. 2011. PMID: 21811232 Free PMC article.

9

Construction and analysis of an integrated regulatory network derived from high-throughput sequencing data.

Cheng C, Yan KK, Hwang W, Qian J, Bhardwaj N, Rozowsky J, Lu ZJ, Niu W, Alves P, Kato M, Snyder M, Gerstein M. Cheng C, et al. Among authors: bhardwaj n. PLoS Comput Biol. 2011 Nov;7(11):e1002190. doi: 10.1371/journal.pcbi.1002190. Epub 2011 Nov 17. PLoS Comput Biol. 2011. PMID: 22125477 Free PMC article.

10

Architecture of the human regulatory network derived from ENCODE data.

Gerstein MB, Kundaje A, Hariharan M, Landt SG, Yan KK, Cheng C, Mu XJ, Khurana E, Rozowsky J, Alexander R, Min R, Alves P, Abyzov A, Addleman N, Bhardwaj N, Boyle AP, Cayting P, Charos A, Chen DZ, Cheng Y, Clarke D, Eastman C, Euskirchen G, Frietze S, Fu Y, Gertz J, Grubert F, Harmanci A, Jain P, Kasowski M, Lacroute P, Leng JJ, Lian J, Monahan H, O'Geen H, Ouyang Z, Partridge EC, Patacsil D, Pauli F, Raha D, Ramirez L, Reddy TE, Reed B, Shi M, Slifer T, Wang J, Wu L, Yang X, Yip KY, Zilberman-Schapira G, Batzoglou S, Sidow A, Farnham PJ, Myers RM, Weissman SM, Snyder M. Gerstein MB, et al. Among authors: bhardwaj n. Nature. 2012 Sep 6;489(7414):91-100. doi: 10.1038/nature11245. Nature. 2012. PMID: 22955619 Free PMC article.

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