Spaink HP - Search Results

1

Integrating heterogeneous sequence information for transcriptome-wide microarray design; a Zebrafish example.

Rauwerda H, de Jong M, de Leeuw WC, Spaink HP, Breit TM. Rauwerda H, et al. Among authors: spaink hp. BMC Res Notes. 2010 Jul 13;3:192. doi: 10.1186/1756-0500-3-192. BMC Res Notes. 2010. PMID: 20626891 Free PMC article.

2

Transcriptome dynamics in early zebrafish embryogenesis determined by high-resolution time course analysis of 180 successive, individual zebrafish embryos.

Rauwerda H, Pagano JF, de Leeuw WC, Ensink W, Nehrdich U, de Jong M, Jonker M, Spaink HP, Breit TM. Rauwerda H, et al. Among authors: spaink hp. BMC Genomics. 2017 Apr 11;18(1):287. doi: 10.1186/s12864-017-3672-z. BMC Genomics. 2017. PMID: 28399811 Free PMC article.

3

RNA isolation method for single embryo transcriptome analysis in zebrafish.

de Jong M, Rauwerda H, Bruning O, Verkooijen J, Spaink HP, Breit TM. de Jong M, et al. Among authors: spaink hp. BMC Res Notes. 2010 Mar 16;3:73. doi: 10.1186/1756-0500-3-73. BMC Res Notes. 2010. PMID: 20233395 Free PMC article.

4

Transcriptome analysis of Traf6 function in the innate immune response of zebrafish embryos.

Stockhammer OW, Rauwerda H, Wittink FR, Breit TM, Meijer AH, Spaink HP. Stockhammer OW, et al. Among authors: spaink hp. Mol Immunol. 2010 Nov-Dec;48(1-3):179-90. doi: 10.1016/j.molimm.2010.08.011. Epub 2010 Sep 18. Mol Immunol. 2010. PMID: 20851470

5

Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization.

Locati MD, Terpstra I, de Leeuw WC, Kuzak M, Rauwerda H, Ensink WA, van Leeuwen S, Nehrdich U, Spaink HP, Jonker MJ, Breit TM, Dekker RJ. Locati MD, et al. Among authors: spaink hp. Nucleic Acids Res. 2015 Aug 18;43(14):e89. doi: 10.1093/nar/gkv303. Epub 2015 Apr 13. Nucleic Acids Res. 2015. PMID: 25870415 Free PMC article.

6

Mother-Specific Signature in the Maternal Transcriptome Composition of Mature, Unfertilized Zebrafish Eggs.

Rauwerda H, Wackers P, Pagano JF, de Jong M, Ensink W, Dekker R, Nehrdich U, Spaink HP, Jonker M, Breit TM. Rauwerda H, et al. Among authors: spaink hp. PLoS One. 2016 Jan 22;11(1):e0147151. doi: 10.1371/journal.pone.0147151. eCollection 2016. PLoS One. 2016. PMID: 26799215 Free PMC article.

7

Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers.

Pagano JF, Rauwerda H, de Leeuw WC, Wackers P, de Jong M, Ensink W, Dekker R, Nehrdich U, Spaink HP, Jonker M, Breit TM. Pagano JF, et al. Among authors: spaink hp. Data Brief. 2016 Apr 26;8:69-72. doi: 10.1016/j.dib.2016.04.045. eCollection 2016 Sep. Data Brief. 2016. PMID: 27284564 Free PMC article.

8

Linking maternal and somatic 5S rRNA types with different sequence-specific non-LTR retrotransposons.

Locati MD, Pagano JF, Ensink WA, van Olst M, van Leeuwen S, Nehrdich U, Zhu K, Spaink HP, Girard G, Rauwerda H, Jonker MJ, Dekker RJ, Breit TM. Locati MD, et al. Among authors: spaink hp. RNA. 2017 Apr;23(4):446-456. doi: 10.1261/rna.059642.116. Epub 2016 Dec 21. RNA. 2017. PMID: 28003516 Free PMC article.

9

Expression of distinct maternal and somatic 5.8S, 18S, and 28S rRNA types during zebrafish development.

Locati MD, Pagano JFB, Girard G, Ensink WA, van Olst M, van Leeuwen S, Nehrdich U, Spaink HP, Rauwerda H, Jonker MJ, Dekker RJ, Breit TM. Locati MD, et al. Among authors: spaink hp. RNA. 2017 Aug;23(8):1188-1199. doi: 10.1261/rna.061515.117. Epub 2017 May 12. RNA. 2017. PMID: 28500251 Free PMC article.

10

Identifying small RNAs derived from maternal- and somatic-type rRNAs in zebrafish development.

Locati MD, Pagano JFB, Abdullah F, Ensink WA, van Olst M, van Leeuwen S, Nehrdich U, Spaink HP, Rauwerda H, Jonker MJ, Dekker RJ, Breit TM. Locati MD, et al. Among authors: spaink hp. Genome. 2018 May;61(5):371-378. doi: 10.1139/gen-2017-0202. Epub 2018 Feb 9. Genome. 2018. PMID: 29425468 Free article.

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