Dobbs D - Search Results

1

Human telomerase model shows the role of the TEN domain in advancing the double helix for the next polymerization step.

Steczkiewicz K, Zimmermann MT, Kurcinski M, Lewis BA, Dobbs D, Kloczkowski A, Jernigan RL, Kolinski A, Ginalski K. Steczkiewicz K, et al. Among authors: dobbs d. Proc Natl Acad Sci U S A. 2011 Jun 7;108(23):9443-8. doi: 10.1073/pnas.1015399108. Epub 2011 May 23. Proc Natl Acad Sci U S A. 2011. PMID: 21606328 Free PMC article.

2

Identifying interaction sites in "recalcitrant" proteins: predicted protein and RNA binding sites in rev proteins of HIV-1 and EIAV agree with experimental data.

Terribilini M, Lee JH, Yan C, Jernigan RL, Carpenter S, Honavar V, Dobbs D. Terribilini M, et al. Among authors: dobbs d. Pac Symp Biocomput. 2006:415-26. Pac Symp Biocomput. 2006. PMID: 17094257 Free PMC article.

3

RNABindR: a server for analyzing and predicting RNA-binding sites in proteins.

Terribilini M, Sander JD, Lee JH, Zaback P, Jernigan RL, Honavar V, Dobbs D. Terribilini M, et al. Among authors: dobbs d. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W578-84. doi: 10.1093/nar/gkm294. Epub 2007 May 5. Nucleic Acids Res. 2007. PMID: 17483510 Free PMC article.

4

PRIDB: a Protein-RNA interface database.

Lewis BA, Walia RR, Terribilini M, Ferguson J, Zheng C, Honavar V, Dobbs D. Lewis BA, et al. Among authors: dobbs d. Nucleic Acids Res. 2011 Jan;39(Database issue):D277-82. doi: 10.1093/nar/gkq1108. Epub 2010 Nov 11. Nucleic Acids Res. 2011. PMID: 21071426 Free PMC article.

5

A MOTIF-BASED METHOD FOR PREDICTING INTERFACIAL RESIDUES IN BOTH THE RNA AND PROTEIN COMPONENTS OF PROTEIN-RNA COMPLEXES.

Muppirala U, Lewis BA, Mann CM, Dobbs D. Muppirala U, et al. Among authors: dobbs d. Pac Symp Biocomput. 2016;21:445-455. Pac Symp Biocomput. 2016. PMID: 26776208 Free PMC article.

6

Prediction of RNA binding sites in proteins from amino acid sequence.

Terribilini M, Lee JH, Yan C, Jernigan RL, Honavar V, Dobbs D. Terribilini M, et al. Among authors: dobbs d. RNA. 2006 Aug;12(8):1450-62. doi: 10.1261/rna.2197306. Epub 2006 Jun 21. RNA. 2006. PMID: 16790841 Free PMC article.

7

Predicting binding sites of hydrolase-inhibitor complexes by combining several methods.

Sen TZ, Kloczkowski A, Jernigan RL, Yan C, Honavar V, Ho KM, Wang CZ, Ihm Y, Cao H, Gu X, Dobbs D. Sen TZ, et al. Among authors: dobbs d. BMC Bioinformatics. 2004 Dec 17;5:205. doi: 10.1186/1471-2105-5-205. BMC Bioinformatics. 2004. PMID: 15606919 Free PMC article.

8

Protein-RNA interface residue prediction using machine learning: an assessment of the state of the art.

Walia RR, Caragea C, Lewis BA, Towfic F, Terribilini M, El-Manzalawy Y, Dobbs D, Honavar V. Walia RR, et al. Among authors: dobbs d. BMC Bioinformatics. 2012 May 10;13:89. doi: 10.1186/1471-2105-13-89. BMC Bioinformatics. 2012. PMID: 22574904 Free PMC article.

9

Characterization of protein-protein interfaces.

Yan C, Wu F, Jernigan RL, Dobbs D, Honavar V. Yan C, et al. Among authors: dobbs d. Protein J. 2008 Jan;27(1):59-70. doi: 10.1007/s10930-007-9108-x. Protein J. 2008. PMID: 17851740 Free PMC article.

10

Predicting DNA-binding sites of proteins from amino acid sequence.

Yan C, Terribilini M, Wu F, Jernigan RL, Dobbs D, Honavar V. Yan C, et al. Among authors: dobbs d. BMC Bioinformatics. 2006 May 19;7:262. doi: 10.1186/1471-2105-7-262. BMC Bioinformatics. 2006. PMID: 16712732 Free PMC article.

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