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Discovery of a novel class of non-ATP site DFG-out state p38 inhibitors utilizing computationally assisted virtual fragment-based drug design (vFBDD).
Bioorg Med Chem Lett. 2011 Dec 1;21(23):7155-65. doi: 10.1016/j.bmcl.2011.09.078. Epub 2011 Sep 28.
Bioorg Med Chem Lett. 2011.
PMID: 22014550
Analysis of imatinib and sorafenib binding to p38alpha compared with c-Abl and b-Raf provides structural insights for understanding the selectivity of inhibitors targeting the DFG-out form of protein kinases.
Namboodiri HV, Bukhtiyarova M, Ramcharan J, Karpusas M, Lee Y, Springman EB.
Namboodiri HV, et al.
Biochemistry. 2010 May 4;49(17):3611-8. doi: 10.1021/bi100070r.
Biochemistry. 2010.
PMID: 20337484
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Mutagenesis of p38alpha MAP kinase establishes key roles of Phe169 in function and structural dynamics and reveals a novel DFG-OUT state.
Bukhtiyarova M, Karpusas M, Northrop K, Namboodiri HV, Springman EB.
Bukhtiyarova M, et al. Among authors: namboodiri hv.
Biochemistry. 2007 May 15;46(19):5687-96. doi: 10.1021/bi0622221. Epub 2007 Apr 19.
Biochemistry. 2007.
PMID: 17441692
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Creutzfeldt-Jakob Disease Following Kidney Transplantation.
Sharma N, Wang L, Namboodiri H.
Sharma N, et al. Among authors: namboodiri h.
Cureus. 2022 Jan 26;14(1):e21632. doi: 10.7759/cureus.21632. eCollection 2022 Jan.
Cureus. 2022.
PMID: 35228978
Free PMC article.
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Potassium-regulated distal tubule WNK bodies are kidney-specific WNK1 dependent.
Boyd-Shiwarski CR, Shiwarski DJ, Roy A, Namboodiri HN, Nkashama LJ, Xie J, McClain KL, Marciszyn A, Kleyman TR, Tan RJ, Stolz DB, Puthenveedu MA, Huang CL, Subramanya AR.
Boyd-Shiwarski CR, et al. Among authors: namboodiri hn.
Mol Biol Cell. 2018 Feb 15;29(4):499-509. doi: 10.1091/mbc.E17-08-0529. Epub 2017 Dec 13.
Mol Biol Cell. 2018.
PMID: 29237822
Free PMC article.
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