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A Scalable, Flexible Workflow for MethylCap-Seq Data Analysis.
Rodriguez B, Tam HH, Frankhouser D, Trimarchi M, Murphy M, Kuo C, Parikh D, Ball B, Schwind S, Curfman J, Blum W, Marcucci G, Yan P, Bundschuh R. Rodriguez B, et al. Among authors: yan p. IEEE Int Workshop Genomic Signal Process Stat. 2011:1-4. doi: 10.1109/GENSiPS.2011.6169426. IEEE Int Workshop Genomic Signal Process Stat. 2011. PMID: 22484542 Free PMC article.
Estrogen-mediated epigenetic repression of large chromosomal regions through DNA looping.
Hsu PY, Hsu HK, Singer GA, Yan PS, Rodriguez BA, Liu JC, Weng YI, Deatherage DE, Chen Z, Pereira JS, Lopez R, Russo J, Wang Q, Lamartiniere CA, Nephew KP, Huang TH. Hsu PY, et al. Among authors: yan ps. Genome Res. 2010 Jun;20(6):733-44. doi: 10.1101/gr.101923.109. Epub 2010 May 4. Genome Res. 2010. PMID: 20442245 Free PMC article.
Genome-wide methylation profiling in decitabine-treated patients with acute myeloid leukemia.
Yan P, Frankhouser D, Murphy M, Tam HH, Rodriguez B, Curfman J, Trimarchi M, Geyer S, Wu YZ, Whitman SP, Metzeler K, Walker A, Klisovic R, Jacob S, Grever MR, Byrd JC, Bloomfield CD, Garzon R, Blum W, Caligiuri MA, Bundschuh R, Marcucci G. Yan P, et al. Blood. 2012 Sep 20;120(12):2466-74. doi: 10.1182/blood-2012-05-429175. Epub 2012 Jul 11. Blood. 2012. PMID: 22786882 Free PMC article.
Methods for high-throughput MethylCap-Seq data analysis.
Rodriguez BA, Frankhouser D, Murphy M, Trimarchi M, Tam HH, Curfman J, Huang R, Chan MW, Lai HC, Parikh D, Ball B, Schwind S, Blum W, Marcucci G, Yan P, Bundschuh R. Rodriguez BA, et al. Among authors: yan p. BMC Genomics. 2012;13 Suppl 6(Suppl 6):S14. doi: 10.1186/1471-2164-13-S6-S14. Epub 2012 Oct 26. BMC Genomics. 2012. PMID: 23134780 Free PMC article.
Enrichment-based DNA methylation analysis using next-generation sequencing: sample exclusion, estimating changes in global methylation, and the contribution of replicate lanes.
Trimarchi MP, Murphy M, Frankhouser D, Rodriguez BA, Curfman J, Marcucci G, Yan P, Bundschuh R. Trimarchi MP, et al. Among authors: yan p. BMC Genomics. 2012;13 Suppl 8(Suppl 8):S6. doi: 10.1186/1471-2164-13-S8-S6. Epub 2012 Dec 17. BMC Genomics. 2012. PMID: 23281662 Free PMC article.
Toward personalized therapy in AML: in vivo benefit of targeting aberrant epigenetics in MLL-PTD-associated AML.
Bernot KM, Siebenaler RF, Whitman SP, Zorko NA, Marcucci GG, Santhanam R, Ahmed EH, Ngangana M, McConnell KK, Nemer JS, Brook DL, Kulp SK, Chen CS, Frankhouser D, Yan P, Bundschuh R, Zhang X, Dorrance AM, Dickerson KE, Jarjoura D, Blum W, Marcucci G, Caligiuri MA. Bernot KM, et al. Among authors: yan p. Leukemia. 2013 Dec;27(12):2379-82. doi: 10.1038/leu.2013.147. Epub 2013 May 10. Leukemia. 2013. PMID: 23660685 Free PMC article. No abstract available.
Epigenetics meets genetics in acute myeloid leukemia: clinical impact of a novel seven-gene score.
Marcucci G, Yan P, Maharry K, Frankhouser D, Nicolet D, Metzeler KH, Kohlschmidt J, Mrózek K, Wu YZ, Bucci D, Curfman JP, Whitman SP, Eisfeld AK, Mendler JH, Schwind S, Becker H, Bär C, Carroll AJ, Baer MR, Wetzler M, Carter TH, Powell BL, Kolitz JE, Byrd JC, Plass C, Garzon R, Caligiuri MA, Stone RM, Volinia S, Bundschuh R, Bloomfield CD. Marcucci G, et al. Among authors: yan p. J Clin Oncol. 2014 Feb 20;32(6):548-56. doi: 10.1200/JCO.2013.50.6337. Epub 2013 Dec 30. J Clin Oncol. 2014. PMID: 24378410 Free PMC article.
3,484 results