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Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines.
Gordon SP, Priest H, Des Marais DL, Schackwitz W, Figueroa M, Martin J, Bragg JN, Tyler L, Lee CR, Bryant D, Wang W, Messing J, Manzaneda AJ, Barry K, Garvin DF, Budak H, Tuna M, Mitchell-Olds T, Pfender WF, Juenger TE, Mockler TC, Vogel JP. Gordon SP, et al. Among authors: schackwitz w. Plant J. 2014 Aug;79(3):361-74. doi: 10.1111/tpj.12569. Epub 2014 Jul 15. Plant J. 2014. PMID: 24888695 Free article.
Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.
Gordon SP, Contreras-Moreira B, Woods DP, Des Marais DL, Burgess D, Shu S, Stritt C, Roulin AC, Schackwitz W, Tyler L, Martin J, Lipzen A, Dochy N, Phillips J, Barry K, Geuten K, Budak H, Juenger TE, Amasino R, Caicedo AL, Goodstein D, Davidson P, Mur LAJ, Figueroa M, Freeling M, Catalan P, Vogel JP. Gordon SP, et al. Among authors: schackwitz w. Nat Commun. 2017 Dec 19;8(1):2184. doi: 10.1038/s41467-017-02292-8. Nat Commun. 2017. PMID: 29259172 Free PMC article.
Genomic Sequence Variation Analysis by Resequencing.
Martin J, Schackwitz W, Lipzen A. Martin J, et al. Among authors: schackwitz w. Methods Mol Biol. 2018;1775:229-239. doi: 10.1007/978-1-4939-7804-5_18. Methods Mol Biol. 2018. PMID: 29876821
Whole-Genome Sequencing Identifies a Rice Grain Shape Mutant, gs9-1.
Jiang L, Li G, Chern M, Jain R, Pham NT, Martin JA, Schackwitz WS, Zhao J, Ruan D, Huang R, Zheng J, Ronald PC. Jiang L, et al. Among authors: schackwitz ws. Rice (N Y). 2019 Jul 18;12(1):52. doi: 10.1186/s12284-019-0308-8. Rice (N Y). 2019. PMID: 31321562 Free PMC article.
Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations.
Bendall ML, Stevens SL, Chan LK, Malfatti S, Schwientek P, Tremblay J, Schackwitz W, Martin J, Pati A, Bushnell B, Froula J, Kang D, Tringe SG, Bertilsson S, Moran MA, Shade A, Newton RJ, McMahon KD, Malmstrom RR. Bendall ML, et al. Among authors: schackwitz w. ISME J. 2016 Jul;10(7):1589-601. doi: 10.1038/ismej.2015.241. Epub 2016 Jan 8. ISME J. 2016. PMID: 26744812 Free PMC article.
Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa.
Slavov GT, DiFazio SP, Martin J, Schackwitz W, Muchero W, Rodgers-Melnick E, Lipphardt MF, Pennacchio CP, Hellsten U, Pennacchio LA, Gunter LE, Ranjan P, Vining K, Pomraning KR, Wilhelm LJ, Pellegrini M, Mockler TC, Freitag M, Geraldes A, El-Kassaby YA, Mansfield SD, Cronk QCB, Douglas CJ, Strauss SH, Rokhsar D, Tuskan GA. Slavov GT, et al. Among authors: schackwitz w. New Phytol. 2012 Nov;196(3):713-725. doi: 10.1111/j.1469-8137.2012.04258.x. Epub 2012 Aug 3. New Phytol. 2012. PMID: 22861491 Free article.
59 results