Beveridge DL - Search Results

1

The ABCs of molecular dynamics simulations on B-DNA, circa 2012.

Beveridge DL, Cheatham TE 3rd, Mezei M. Beveridge DL, et al. J Biosci. 2012 Jul;37(3):379-97. doi: 10.1007/s12038-012-9222-6. J Biosci. 2012. PMID: 22750978 Free PMC article. Review.

2

Toward a dynamical structure of DNA: comparison of theoretical and experimental NOE intensities.

Withka JM, Swaminathan S, Srinivasan J, Beveridge DL, Bolton PH. Withka JM, et al. Among authors: beveridge dl. Science. 1992 Jan 31;255(5044):597-9. doi: 10.1126/science.1736362. Science. 1992. PMID: 1736362

3

Molecular dynamics of an in vacuo model of duplex d(CGCGAATTCGCG) in the B-form based on the amber 3.0 force field.

Srinivasan J, Withka JM, Beveridge DL. Srinivasan J, et al. Among authors: beveridge dl. Biophys J. 1990 Aug;58(2):533-47. doi: 10.1016/S0006-3495(90)82397-3. Biophys J. 1990. PMID: 2207251 Free PMC article.

4

Free energy simulations.

Mezei M, Beveridge DL. Mezei M, et al. Among authors: beveridge dl. Ann N Y Acad Sci. 1986;482:1-23. doi: 10.1111/j.1749-6632.1986.tb20933.x. Ann N Y Acad Sci. 1986. PMID: 3471099 No abstract available.

5

Structural chemistry of biomolecular hydration via computer simulation: the proximity criterion.

Mezei M, Beveridge DL. Mezei M, et al. Among authors: beveridge dl. Methods Enzymol. 1986;127:21-47. doi: 10.1016/0076-6879(86)27005-6. Methods Enzymol. 1986. PMID: 3755494 No abstract available.

6

Monte Carlo studies on water in the dCpG/proflavin crystal hydrate.

Mezei M, Beveridge DL, Berman HM, Goodfellow JM, Finney JL, Neidle S. Mezei M, et al. Among authors: beveridge dl. J Biomol Struct Dyn. 1983 Oct;1(1):287-97. doi: 10.1080/07391102.1983.10507440. J Biomol Struct Dyn. 1983. PMID: 6400875

7

Monte Carlo computer simulation of the aqueous hydration of the glycine zwitterion at 25 degree C.

Mezei M, Mehrotra PK, Beveridge DL. Mezei M, et al. Among authors: beveridge dl. J Biomol Struct Dyn. 1984 Aug;2(1):1-27. doi: 10.1080/07391102.1984.10507543. J Biomol Struct Dyn. 1984. PMID: 6400925

8

Aqueous hydration of nucleic acid constituents: Monte Carlo computer simulation studies.

Beveridge DL, Maye PV, Jayaram B, Ravishanker G, Mezei M. Beveridge DL, et al. J Biomol Struct Dyn. 1984 Oct;2(2):261-70. doi: 10.1080/07391102.1984.10507565. J Biomol Struct Dyn. 1984. PMID: 6401130 Review.

9

Structure determination and analysis of local bending in an A-tract DNA duplex: comparison of results from crystallography, nuclear magnetic resonance, and molecular dynamics simulation on d(CGCAAAAATGCG).

Young MA, Srinivasan J, Goljer I, Kumar S, Beveridge DL, Bolton PH. Young MA, et al. Among authors: beveridge dl. Methods Enzymol. 1995;261:121-44. doi: 10.1016/s0076-6879(95)61007-3. Methods Enzymol. 1995. PMID: 8569492

10

A 5-nanosecond molecular dynamics trajectory for B-DNA: analysis of structure, motions, and solvation.

Young MA, Ravishanker G, Beveridge DL. Young MA, et al. Among authors: beveridge dl. Biophys J. 1997 Nov;73(5):2313-36. doi: 10.1016/S0006-3495(97)78263-8. Biophys J. 1997. PMID: 9370428 Free PMC article.

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