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MORPH-PRO: a novel algorithm and web server for protein morphing.
Algorithms Mol Biol. 2013 Jul 11;8(1):19. doi: 10.1186/1748-7188-8-19.
Algorithms Mol Biol. 2013.
PMID: 23844614
Free PMC article.
Top-down analysis of protein samples by de novo sequencing techniques.
Vyatkina K, Wu S, Dekker LJ, VanDuijn MM, Liu X, Tolić N, Luider TM, Paša-Tolić L, Pevzner PA.
Vyatkina K, et al.
Bioinformatics. 2016 Sep 15;32(18):2753-9. doi: 10.1093/bioinformatics/btw307. Epub 2016 May 14.
Bioinformatics. 2016.
PMID: 27187201
Free PMC article.
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De Novo Sequencing of Peptides from Top-Down Tandem Mass Spectra.
Vyatkina K, Wu S, Dekker LJ, VanDuijn MM, Liu X, Tolić N, Dvorkin M, Alexandrova S, Luider TM, Paša-Tolić L, Pevzner PA.
Vyatkina K, et al.
J Proteome Res. 2015 Nov 6;14(11):4450-62. doi: 10.1021/pr501244v. Epub 2015 Oct 13.
J Proteome Res. 2015.
PMID: 26412692
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Application of de novo sequencing tools to study abiogenic peptide formations by tandem mass spectrometry. The case of homo-peptides from glutamic acid complicated by substitutions of hydrogen by sodium or potassium atoms.
Terterov I, Vyatkina K, Kononikhin AS, Boitsov V, Vyazmin S, Popov IA, Nikolaev EN, Pevzner P, Dubina M.
Terterov I, et al. Among authors: vyatkina k.
Rapid Commun Mass Spectrom. 2014 Jan 15;28(1):33-41. doi: 10.1002/rcm.6757.
Rapid Commun Mass Spectrom. 2014.
PMID: 24285388
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De novo protein sequencing by combining top-down and bottom-up tandem mass spectra.
Liu X, Dekker LJ, Wu S, Vanduijn MM, Luider TM, Tolić N, Kou Q, Dvorkin M, Alexandrova S, Vyatkina K, Paša-Tolić L, Pevzner PA.
Liu X, et al. Among authors: vyatkina k.
J Proteome Res. 2014 Jul 3;13(7):3241-8. doi: 10.1021/pr401300m. Epub 2014 Jun 18.
J Proteome Res. 2014.
PMID: 24874765
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De Novo Sequencing of Peptides from High-Resolution Bottom-Up Tandem Mass Spectra using Top-Down Intended Methods.
Vyatkina K, Dekker LJM, Wu S, VanDuijn MM, Liu X, Tolić N, Luider TM, Paša-Tolić L.
Vyatkina K, et al.
Proteomics. 2017 Dec;17(23-24). doi: 10.1002/pmic.201600321.
Proteomics. 2017.
PMID: 29110399
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Validation of De Novo Peptide Sequences with Bottom-Up Tag Convolution.
Vyatkina K.
Vyatkina K.
Proteomes. 2021 Dec 29;10(1):1. doi: 10.3390/proteomes10010001.
Proteomes. 2021.
PMID: 35076636
Free PMC article.
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De Novo Sequencing of Top-Down Tandem Mass Spectra: A Next Step towards Retrieving a Complete Protein Sequence.
Vyatkina K.
Vyatkina K.
Proteomes. 2017 Feb 8;5(1):6. doi: 10.3390/proteomes5010006.
Proteomes. 2017.
PMID: 28248257
Free PMC article.
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