Xu D - Search Results

1

Transmembrane protein alignment and fold recognition based on predicted topology.

Wang H, He Z, Zhang C, Zhang L, Xu D. Wang H, et al. Among authors: xu d. PLoS One. 2013 Jul 19;8(7):e69744. doi: 10.1371/journal.pone.0069744. Print 2013. PLoS One. 2013. PMID: 23894534 Free PMC article.

2

Design and implementation of probability-based scoring function for peptide mass fingerprinting protein identification.

Song Z, Chen L, Zhang C, Xu D. Song Z, et al. Among authors: xu d. Conf Proc IEEE Eng Med Biol Soc. 2006;2006:4556-9. doi: 10.1109/IEMBS.2006.260150. Conf Proc IEEE Eng Med Biol Soc. 2006. PMID: 17946250

3

GeneFAS: A tool for prediction of gene function using multiple sources of data.

Joshi T, Zhang C, Lin GN, Song Z, Xu D. Joshi T, et al. Among authors: xu d. Methods Mol Biol. 2008;439:369-86. doi: 10.1007/978-1-59745-188-8_25. Methods Mol Biol. 2008. PMID: 18370116

4

A critical assessment of Mus musculus gene function prediction using integrated genomic evidence.

Peña-Castillo L, Tasan M, Myers CL, Lee H, Joshi T, Zhang C, Guan Y, Leone M, Pagnani A, Kim WK, Krumpelman C, Tian W, Obozinski G, Qi Y, Mostafavi S, Lin GN, Berriz GF, Gibbons FD, Lanckriet G, Qiu J, Grant C, Barutcuoglu Z, Hill DP, Warde-Farley D, Grouios C, Ray D, Blake JA, Deng M, Jordan MI, Noble WS, Morris Q, Klein-Seetharaman J, Bar-Joseph Z, Chen T, Sun F, Troyanskaya OG, Marcotte EM, Xu D, Hughes TR, Roth FP. Peña-Castillo L, et al. Among authors: xu d. Genome Biol. 2008;9 Suppl 1(Suppl 1):S2. doi: 10.1186/gb-2008-9-s1-s2. Epub 2008 Jun 27. Genome Biol. 2008. PMID: 18613946 Free PMC article.

5

MUFOLD: A new solution for protein 3D structure prediction.

Zhang J, Wang Q, Barz B, He Z, Kosztin I, Shang Y, Xu D. Zhang J, et al. Among authors: xu d. Proteins. 2010 Apr;78(5):1137-52. doi: 10.1002/prot.22634. Proteins. 2010. PMID: 19927325 Free PMC article.

6

An integrated probabilistic approach for gene function prediction using multiple sources of high-throughput data.

Zhang C, Joshi T, Lin GN, Xu D. Zhang C, et al. Among authors: xu d. Int J Comput Biol Drug Des. 2008;1(3):254-74. doi: 10.1504/ijcbdd.2008.021418. Int J Comput Biol Drug Des. 2008. PMID: 20054992

7

Effector prediction in host-pathogen interaction based on a Markov model of a ubiquitous EPIYA motif.

Xu S, Zhang C, Miao Y, Gao J, Xu D. Xu S, et al. Among authors: xu d. BMC Genomics. 2010 Dec 1;11 Suppl 3(Suppl 3):S1. doi: 10.1186/1471-2164-11-S3-S1. BMC Genomics. 2010. PMID: 21143776 Free PMC article.

8

A protein domain co-occurrence network approach for predicting protein function and inferring species phylogeny.

Wang Z, Zhang XC, Le MH, Xu D, Stacey G, Cheng J. Wang Z, et al. Among authors: xu d. PLoS One. 2011 Mar 24;6(3):e17906. doi: 10.1371/journal.pone.0017906. PLoS One. 2011. PMID: 21455299 Free PMC article.

9

A sampling-based method for ranking protein structural models by integrating multiple scores and features.

Shi X, Zhang J, He Z, Shang Y, Xu D. Shi X, et al. Among authors: xu d. Curr Protein Pept Sci. 2011 Sep;12(6):540-8. doi: 10.2174/138920311796957658. Curr Protein Pept Sci. 2011. PMID: 21787308 Free PMC article.

10

Prediction of drought-resistant genes in Arabidopsis thaliana using SVM-RFE.

Liang Y, Zhang F, Wang J, Joshi T, Wang Y, Xu D. Liang Y, et al. Among authors: xu d. PLoS One. 2011;6(7):e21750. doi: 10.1371/journal.pone.0021750. Epub 2011 Jul 15. PLoS One. 2011. PMID: 21789178 Free PMC article.

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