Abubucker S - Search Results

1

Precise dissection of an Escherichia coli O157:H7 outbreak by single nucleotide polymorphism analysis.

Turabelidze G, Lawrence SJ, Gao H, Sodergren E, Weinstock GM, Abubucker S, Wylie T, Mitreva M, Shaikh N, Gautom R, Tarr PI. Turabelidze G, et al. Among authors: abubucker s. J Clin Microbiol. 2013 Dec;51(12):3950-4. doi: 10.1128/JCM.01930-13. Epub 2013 Sep 18. J Clin Microbiol. 2013. PMID: 24048526 Free PMC article.

2

Sepsis from the gut: the enteric habitat of bacteria that cause late-onset neonatal bloodstream infections.

Carl MA, Ndao IM, Springman AC, Manning SD, Johnson JR, Johnston BD, Burnham CA, Weinstock ES, Weinstock GM, Wylie TN, Mitreva M, Abubucker S, Zhou Y, Stevens HJ, Hall-Moore C, Julian S, Shaikh N, Warner BB, Tarr PI. Carl MA, et al. Among authors: abubucker s. Clin Infect Dis. 2014 May;58(9):1211-8. doi: 10.1093/cid/ciu084. Epub 2014 Mar 18. Clin Infect Dis. 2014. PMID: 24647013 Free PMC article.

3

Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomics.

Martin J, Abubucker S, Wylie T, Yin Y, Wang Z, Mitreva M. Martin J, et al. Among authors: abubucker s. Nucleic Acids Res. 2009 Jan;37(Database issue):D571-8. doi: 10.1093/nar/gkn744. Epub 2008 Oct 21. Nucleic Acids Res. 2009. PMID: 18940860 Free PMC article.

4

Characterizing Ancylostoma caninum transcriptome and exploring nematode parasitic adaptation.

Wang Z, Abubucker S, Martin J, Wilson RK, Hawdon J, Mitreva M. Wang Z, et al. Among authors: abubucker s. BMC Genomics. 2010 May 14;11:307. doi: 10.1186/1471-2164-11-307. BMC Genomics. 2010. PMID: 20470405 Free PMC article.

5

HelmCoP: an online resource for helminth functional genomics and drug and vaccine targets prioritization.

Abubucker S, Martin J, Taylor CM, Mitreva M. Abubucker S, et al. PLoS One. 2011;6(7):e21832. doi: 10.1371/journal.pone.0021832. Epub 2011 Jul 8. PLoS One. 2011. PMID: 21760913 Free PMC article.

6

Nematode.net update 2011: addition of data sets and tools featuring next-generation sequencing data.

Martin J, Abubucker S, Heizer E, Taylor CM, Mitreva M. Martin J, et al. Among authors: abubucker s. Nucleic Acids Res. 2012 Jan;40(Database issue):D720-8. doi: 10.1093/nar/gkr1194. Epub 2011 Dec 1. Nucleic Acids Res. 2012. PMID: 22139919 Free PMC article.

7

Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment.

Nobel YR, Cox LM, Kirigin FF, Bokulich NA, Yamanishi S, Teitler I, Chung J, Sohn J, Barber CM, Goldfarb DS, Raju K, Abubucker S, Zhou Y, Ruiz VE, Li H, Mitreva M, Alekseyenko AV, Weinstock GM, Sodergren E, Blaser MJ. Nobel YR, et al. Among authors: abubucker s. Nat Commun. 2015 Jun 30;6:7486. doi: 10.1038/ncomms8486. Nat Commun. 2015. PMID: 26123276 Free PMC article.

8

Exploring metazoan evolution through dynamic and holistic changes in protein families and domains.

Wang Z, Zarlenga D, Martin J, Abubucker S, Mitreva M. Wang Z, et al. Among authors: abubucker s. BMC Evol Biol. 2012 Aug 3;12:138. doi: 10.1186/1471-2148-12-138. BMC Evol Biol. 2012. PMID: 22862991 Free PMC article.

9

Using existing drugs as leads for broad spectrum anthelmintics targeting protein kinases.

Taylor CM, Martin J, Rao RU, Powell K, Abubucker S, Mitreva M. Taylor CM, et al. Among authors: abubucker s. PLoS Pathog. 2013 Feb;9(2):e1003149. doi: 10.1371/journal.ppat.1003149. Epub 2013 Feb 14. PLoS Pathog. 2013. PMID: 23459584 Free PMC article.

10

NemaPath: online exploration of KEGG-based metabolic pathways for nematodes.

Wylie T, Martin J, Abubucker S, Yin Y, Messina D, Wang Z, McCarter JP, Mitreva M. Wylie T, et al. Among authors: abubucker s. BMC Genomics. 2008 Nov 4;9:525. doi: 10.1186/1471-2164-9-525. BMC Genomics. 2008. PMID: 18983679 Free PMC article.

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