González Barrios AF - Search Results

1

Modeling of the hypothalamic-pituitary-adrenal axis-mediated interaction between the serotonin regulation pathway and the stress response using a Boolean approximation: a novel study of depression.

Moreno-Ramos OA, Lattig MC, González Barrios AF. Moreno-Ramos OA, et al. Among authors: gonzalez barrios af. Theor Biol Med Model. 2013 Oct 5;10:59. doi: 10.1186/1742-4682-10-59. Theor Biol Med Model. 2013. PMID: 24093582 Free PMC article.

2

A network model for biofilm development in Escherichia coli K-12.

Shalá AA, Restrepo S, González Barrios AF. Shalá AA, et al. Among authors: gonzalez barrios af. Theor Biol Med Model. 2011 Sep 22;8:34. doi: 10.1186/1742-4682-8-34. Theor Biol Med Model. 2011. PMID: 21939518 Free PMC article.

3

Escherichia coli autoinducer-2 uptake network does not display hysteretic behavior but AI-2 synthesis rate controls transient bifurcation.

Gonzalez Barrios AF, Achenie LE. Gonzalez Barrios AF, et al. Biosystems. 2010 Jan;99(1):17-26. doi: 10.1016/j.biosystems.2009.08.003. Epub 2009 Aug 18. Biosystems. 2010. PMID: 19695305

4

Peptides design based on transmembrane Escherichia coli's OmpA protein through molecular dynamics simulations in water-dodecane interfaces.

Aguilera-Segura SM, Núñez Vélez V, Achenie L, Álvarez Solano O, Torres R, González Barrios AF. Aguilera-Segura SM, et al. Among authors: gonzalez barrios af. J Mol Graph Model. 2016 Jul;68:216-223. doi: 10.1016/j.jmgm.2016.07.006. Epub 2016 Jul 21. J Mol Graph Model. 2016. PMID: 27474866

5

A synthetic multi-cellular network of coupled self-sustained oscillators.

Fernández-Niño M, Giraldo D, Gomez-Porras JL, Dreyer I, González Barrios AF, Arevalo-Ferro C. Fernández-Niño M, et al. Among authors: gonzalez barrios af. PLoS One. 2017 Jun 29;12(6):e0180155. doi: 10.1371/journal.pone.0180155. eCollection 2017. PLoS One. 2017. PMID: 28662174 Free PMC article.

6

Compartmentalized metabolic network reconstruction of microbial communities to determine the effect of agricultural intervention on soils.

Alvarez-Silva MC, Álvarez-Yela AC, Gómez-Cano F, Zambrano MM, Husserl J, Danies G, Restrepo S, González-Barrios AF. Alvarez-Silva MC, et al. Among authors: gonzalez barrios af. PLoS One. 2017 Aug 2;12(8):e0181826. doi: 10.1371/journal.pone.0181826. eCollection 2017. PLoS One. 2017. PMID: 28767679 Free PMC article.

7

Clostridium butyricum maximizes growth while minimizing enzyme usage and ATP production: metabolic flux distribution of a strain cultured in glycerol.

Serrano-Bermúdez LM, González Barrios AF, Maranas CD, Montoya D. Serrano-Bermúdez LM, et al. Among authors: gonzalez barrios af. BMC Syst Biol. 2017 Jun 1;11(1):58. doi: 10.1186/s12918-017-0434-0. BMC Syst Biol. 2017. PMID: 28571567 Free PMC article.

8

Development of a group contribution method for estimating free energy of peptides in a dodecane-water system via molecular dynamic simulations.

Mora Osorio CA, González Barrios AF. Mora Osorio CA, et al. Among authors: gonzalez barrios af. BMC Bioinformatics. 2016 Dec 7;17(1):522. doi: 10.1186/s12859-016-1399-5. BMC Bioinformatics. 2016. PMID: 27927167 Free PMC article.

9

Clostridium butyricum population balance model: Predicting dynamic metabolic flux distributions using an objective function related to extracellular glycerol content.

Serrano-Bermúdez LM, González Barrios AF, Montoya D. Serrano-Bermúdez LM, et al. Among authors: gonzalez barrios af. PLoS One. 2018 Dec 20;13(12):e0209447. doi: 10.1371/journal.pone.0209447. eCollection 2018. PLoS One. 2018. PMID: 30571717 Free PMC article.

10

A Holistic Approach from Systems Biology Reveals the Direct Influence of the Quorum-Sensing Phenomenon on Pseudomonas aeruginosa Metabolism to Pyoverdine Biosynthesis.

Clavijo-Buriticá DC, Arévalo-Ferro C, González Barrios AF. Clavijo-Buriticá DC, et al. Among authors: gonzalez barrios af. Metabolites. 2023 May 16;13(5):659. doi: 10.3390/metabo13050659. Metabolites. 2023. PMID: 37233700 Free PMC article.

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