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Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701(T)) and emended description of the genus Thermanaerovibrio.
Palaniappan K, Meier-Kolthoff JP, Teshima H, Nolan M, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Rohde M, Mayilraj S, Spring S, Detter JC, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Woyke T. Palaniappan K, et al. Among authors: hugenholtz p. Stand Genomic Sci. 2013 Oct 2;9(1):57-70. doi: 10.4056/sigs.4237901. eCollection 2013 Oct 16. Stand Genomic Sci. 2013. PMID: 24501645 Free PMC article.
The integrated microbial genomes (IMG) system.
Markowitz VM, Korzeniewski F, Palaniappan K, Szeto E, Werner G, Padki A, Zhao X, Dubchak I, Hugenholtz P, Anderson I, Lykidis A, Mavromatis K, Ivanova N, Kyrpides NC. Markowitz VM, et al. Among authors: hugenholtz p. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D344-8. doi: 10.1093/nar/gkj024. Nucleic Acids Res. 2006. PMID: 16381883 Free PMC article.
Genomics. Genome project standards in a new era of sequencing.
Chain PS, Grafham DV, Fulton RS, Fitzgerald MG, Hostetler J, Muzny D, Ali J, Birren B, Bruce DC, Buhay C, Cole JR, Ding Y, Dugan S, Field D, Garrity GM, Gibbs R, Graves T, Han CS, Harrison SH, Highlander S, Hugenholtz P, Khouri HM, Kodira CD, Kolker E, Kyrpides NC, Lang D, Lapidus A, Malfatti SA, Markowitz V, Metha T, Nelson KE, Parkhill J, Pitluck S, Qin X, Read TD, Schmutz J, Sozhamannan S, Sterk P, Strausberg RL, Sutton G, Thomson NR, Tiedje JM, Weinstock G, Wollam A; Genomic Standards Consortium Human Microbiome Project Jumpstart Consortium; Detter JC. Chain PS, et al. Among authors: hugenholtz p. Science. 2009 Oct 9;326(5950):236-7. doi: 10.1126/science.1180614. Science. 2009. PMID: 19815760 Free PMC article.
A call for standardized classification of metagenome projects.
Ivanova N, Tringe SG, Liolios K, Liu WT, Morrison N, Hugenholtz P, Kyrpides NC. Ivanova N, et al. Among authors: hugenholtz p. Environ Microbiol. 2010 Jul;12(7):1803-5. doi: 10.1111/j.1462-2920.2010.02270.x. Environ Microbiol. 2010. PMID: 20653767 Review. No abstract available.
Defining the core Arabidopsis thaliana root microbiome.
Lundberg DS, Lebeis SL, Paredes SH, Yourstone S, Gehring J, Malfatti S, Tremblay J, Engelbrektson A, Kunin V, Del Rio TG, Edgar RC, Eickhorst T, Ley RE, Hugenholtz P, Tringe SG, Dangl JL. Lundberg DS, et al. Among authors: hugenholtz p. Nature. 2012 Aug 2;488(7409):86-90. doi: 10.1038/nature11237. Nature. 2012. PMID: 22859206 Free PMC article.
Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NAL(T)).
Anderson I, Chertkov O, Chen A, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mikhailova N, Pati A, Palaniappan K, Land M, Pan C, Rohde M, Pukall R, Göker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Mavromatis K. Anderson I, et al. Among authors: hugenholtz p. Stand Genomic Sci. 2012 Jul 30;6(3):1-13. doi: 10.4056/sigs.2736042. Epub 2012 Jul 20. Stand Genomic Sci. 2012. PMID: 23407703 Free PMC article.
Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8(T)).
Anderson I, Munk C, Lapidus A, Nolan M, Lucas S, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin L, Pitluck S, Liolios K, Mavromatis K, Pagani I, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Rohde M, Tindall BJ, Göker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Ivanova N. Anderson I, et al. Among authors: hugenholtz p. Stand Genomic Sci. 2012 Dec 19;7(2):210-20. doi: 10.4056/sigs.3117229. Epub 2012 Dec 4. Stand Genomic Sci. 2012. PMID: 23408178 Free PMC article.
Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282(T)).
Riedel T, Held B, Nolan M, Lucas S, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Rohde M, Tindall BJ, Detter JC, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Woyke T. Riedel T, et al. Among authors: hugenholtz p. Stand Genomic Sci. 2012 Oct 10;7(1):107-19. doi: 10.4056/sigs.3216895. Stand Genomic Sci. 2012. PMID: 23450183 Free PMC article.
747 results